RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 AGAP3Q96P47 875 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 PICK1Q9NRD5 415 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 SCN11AQ9UI33 1791 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 GNAT2P19087 354 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 HSPA4P34932 840 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 RSRC2Q7L4I2 434 aaKnown RBP10.35□□□□□ -0.75
UBR4-201ENST00000375218 ZNF354CQ86Y25 554 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 UNC45AQ9H3U1 944 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 KIF1AQ12756 1690 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 PRRT4C9JH25 899 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 RTCAO00442 366 aaKnown RBP10.35□□□□□ -0.75
UBR4-201ENST00000375218 UBXN2AP68543 259 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 DCTN1Q14203 1278 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 PUM3Q15397 648 aaKnown RBP10.35□□□□□ -0.75
UBR4-201ENST00000375218 TMEM110Q86TL2 294 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 BRSK2Q8IWQ3 736 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 SPICE1Q8N0Z3 855 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 GSDMAQ96QA5 445 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 ZMAT5Q9UDW3 170 aaKnown RBP10.35□□□□□ -0.75
UBR4-201ENST00000375218 EVC2Q86UK5 1308 aa10.35□□□□□ -0.75
UBR4-201ENST00000375218 ZNF76P36508 570 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 COPAP53621 1224 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 NFXL1Q6ZNB6 911 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 MTERF4Q7Z6M4 381 aaKnown RBP10.34□□□□□ -0.75
UBR4-201ENST00000375218 STON2Q8WXE9 905 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 TNPO1Q92973 898 aaKnown RBP10.34□□□□□ -0.75
UBR4-201ENST00000375218 VTI1BQ9UEU0 232 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 NOVA2Q9UNW9 492 aaKnown RBP10.34□□□□□ -0.75
UBR4-201ENST00000375218 AATKQ6ZMQ8 1374 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 PAPPAQ13219 1627 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 RASSF10A6NK89 507 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 AP1G2O75843 785 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 WTAPQ15007 396 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 PLCB4Q15147 1175 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 ZC3H12BQ5HYM0 836 aaKnown RBP10.34□□□□□ -0.75
UBR4-201ENST00000375218 AKNAD1Q5T1N1 836 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 C10orf76Q5T2E6 689 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 C6orf118Q5T5N4 469 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 KIAA1614Q5VZ46 1190 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 TTC8Q8TAM2 541 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 HPS3Q969F9 1004 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 MFRPQ9BY79 579 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 MED4Q9NPJ6 270 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 CASZ1Q86V15 1759 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 UBR2Q8IWV8 1755 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 ATP6V1E1P36543 226 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 EIF2B5Q13144 721 aaKnown RBP10.34□□□□□ -0.75
UBR4-201ENST00000375218 ASIC2Q16515 512 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 KIF4BQ2VIQ3 1234 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 PPP4R3AQ6IN85 833 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 NEK10Q6ZWH5 1172 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 CEP131Q9UPN4 1083 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 PCDHGB3Q9Y5G1 929 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 SLC4A7Q9Y6M7 1214 aa10.34□□□□□ -0.75
UBR4-201ENST00000375218 ESYT3A0FGR9 886 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 GNPATO15228 680 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 HSPA2P54652 639 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 NSUN2Q08J23 767 aaKnown RBP eCLIP10.33□□□□□ -0.76
UBR4-201ENST00000375218 RRS1Q15050 365 aaKnown RBP10.33□□□□□ -0.76
UBR4-201ENST00000375218 RABL6Q3YEC7 729 aaPredicted RBP10.33□□□□□ -0.76
UBR4-201ENST00000375218 GOLGA6L1Q8N7Z2 621 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 YIPF2Q9BWQ6 316 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 TRIM17Q9Y577 477 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 PPP1R3GB7ZBB8 358 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 MTHFD1P11586 935 aaKnown RBP10.33□□□□□ -0.76
UBR4-201ENST00000375218 RC3H1Q5TC82 1133 aaKnown RBP10.33□□□□□ -0.76
UBR4-201ENST00000375218 MILR1Q7Z6M3 343 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 CSRNP2Q9H175 543 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 PLA2G4AP47712 749 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 SLFN5Q08AF3 891 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 TKFCQ3LXA3 575 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 GLYCTKQ8IVS8 523 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 KCT2Q8NC54 265 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 SH3TC2Q8TF17 1288 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 NGRNQ9NPE2 291 aaKnown RBP10.33□□□□□ -0.76
UBR4-201ENST00000375218 NLRP2Q9NX02 1062 aa10.33□□□□□ -0.76
UBR4-201ENST00000375218 ATAD2Q6PL18 1390 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 NINLQ9Y2I6 1382 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 CCDC196A0A1B0GTZ2 297 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 A6NJY4 79 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 FOXN3O00409 490 aaPredicted RBP10.32□□□□□ -0.76
UBR4-201ENST00000375218 SLC27A2O14975 620 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 SSTR3P32745 418 aaPredicted RBP10.32□□□□□ -0.76
UBR4-201ENST00000375218 MCM2P49736 904 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 COX10Q12887 443 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 CCBE1Q6UXH8 406 aaPredicted RBP10.32□□□□□ -0.76
UBR4-201ENST00000375218 CPSF2Q9P2I0 782 aaKnown RBP10.32□□□□□ -0.76
UBR4-201ENST00000375218 TPCN1Q9ULQ1 816 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 RTL10Q7L3V2 364 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 PRR7Q8TB68 274 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 ORAI2Q96SN7 254 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 ATG3Q9NT62 314 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 TBC1D7Q9P0N9 293 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.32□□□□□ -0.76
UBR4-201ENST00000375218 APAF1O14727 1248 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 MSH6P52701 1360 aa10.32□□□□□ -0.76
UBR4-201ENST00000375218 C1orf167Q5SNV9 1468 aa10.31□□□□□ -0.76
UBR4-201ENST00000375218 CHL1O00533 1208 aa10.31□□□□□ -0.76
UBR4-201ENST00000375218 VAMP4O75379 141 aa10.31□□□□□ -0.76
UBR4-201ENST00000375218 P4HBP07237 508 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms