RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ITGBL1O95965 494 aaPredicted RBP16.71■□□□□ 0.27
HMGA1-203ENST00000374116 USP5P45974 858 aa16.71■□□□□ 0.27
HMGA1-203ENST00000374116 PRKG1Q13976 671 aa16.71■□□□□ 0.27
HMGA1-203ENST00000374116 CDC37L1Q7L3B6 337 aa16.71■□□□□ 0.27
HMGA1-203ENST00000374116 SYAP1Q96A49 352 aaPredicted RBP16.71■□□□□ 0.27
HMGA1-203ENST00000374116 TPCN1Q9ULQ1 816 aa16.71■□□□□ 0.27
HMGA1-203ENST00000374116 F13A1P00488 732 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 LRRFIP1Q32MZ4 808 aaKnown RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 APOBEC3FQ8IUX4 373 aaKnown RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 SMC1BQ8NDV3 1235 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 STRBPQ96SI9 672 aaKnown RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 TMEM63CQ9P1W3 806 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 RBM27Q9P2N5 1060 aaKnown RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 SLC4A4Q9Y6R1 1079 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 FLT1P17948 1338 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 DDTLA6NHG4 134 aaPredicted RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 SMIM22K7EJ46 135 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 HSPD1P10809 573 aaKnown RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 FGD1P98174 961 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 TOB2Q14106 344 aaPredicted RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 NBPF12Q5TAG4 269 aaPredicted RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 SH3BP5LQ7L8J4 393 aa16.7■□□□□ 0.26
HMGA1-203ENST00000374116 ZSCAN29Q8IWY8 852 aaPredicted RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 BAZ2AQ9UIF9 1905 aaKnown RBP16.7■□□□□ 0.26
HMGA1-203ENST00000374116 PITPNM2Q9BZ72 1349 aa16.69■□□□□ 0.26
HMGA1-203ENST00000374116 LRSAM1Q6UWE0 723 aa16.69■□□□□ 0.26
HMGA1-203ENST00000374116 NEK1Q96PY6 1258 aa16.69■□□□□ 0.26
HMGA1-203ENST00000374116 IDI2Q9BXS1 227 aa16.69■□□□□ 0.26
HMGA1-203ENST00000374116 CYP2D7A0A087X1C5 515 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 FOXP2O15409 715 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 APPP05067 770 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 PLCG2P16885 1265 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 MIGA2Q7L4E1 593 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 RBM46Q8TBY0 533 aaKnown RBP16.68■□□□□ 0.26
HMGA1-203ENST00000374116 CDCA5Q96FF9 252 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 TEPSINQ96N21 525 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 CRNKL1Q9BZJ0 848 aaKnown RBP16.68■□□□□ 0.26
HMGA1-203ENST00000374116 FOCADQ5VW36 1801 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 FAM196BA6NMK8 535 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 IGSF3O75054 1194 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 PDCP20941 246 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 TNFAIP1Q13829 316 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 STOX1Q6ZVD7 989 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 MOB2Q70IA6 237 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 NECAB1Q8N987 351 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 OSBPL5Q9H0X9 879 aaPredicted RBP16.68■□□□□ 0.26
HMGA1-203ENST00000374116 MTMR6Q9Y217 621 aa16.68■□□□□ 0.26
HMGA1-203ENST00000374116 GSG1L2A8MUP6 293 aa16.67■□□□□ 0.26
HMGA1-203ENST00000374116 CYP2D6P10635 497 aa16.67■□□□□ 0.26
HMGA1-203ENST00000374116 TNNI2P48788 182 aa16.67■□□□□ 0.26
HMGA1-203ENST00000374116 STK11IPQ8N1F8 1099 aa16.67■□□□□ 0.26
HMGA1-203ENST00000374116 FAM151AQ8WW52 585 aa16.67■□□□□ 0.26
HMGA1-203ENST00000374116 GTPBP4Q9BZE4 634 aaKnown RBP16.67■□□□□ 0.26
HMGA1-203ENST00000374116 DCP1AQ9NPI6 582 aaPredicted RBP16.67■□□□□ 0.26
HMGA1-203ENST00000374116 CCDC39Q9UFE4 941 aa16.67■□□□□ 0.26
HMGA1-203ENST00000374116 MYH1P12882 1939 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 HMGB1P09429 215 aaKnown RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 FOXD4L6Q3SYB3 417 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 FOXD4L3Q6VB84 417 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 EPB41L4AQ9HCS5 686 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 MCM9Q9NXL9 1143 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 MKRN1Q9UHC7 482 aaKnown RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 SYCE3A1L190 88 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 CELF2O95319 508 aaKnown RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 CST9Q5W186 159 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 TMED8Q6PL24 325 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-203ENST00000374116 FAM83AQ86UY5 434 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 CSRNP1Q96S65 589 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 GDPD2Q9HCC8 539 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 CNPY2Q9Y2B0 182 aa16.66■□□□□ 0.26
HMGA1-203ENST00000374116 NAV1Q8NEY1 1877 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 SSC5DA1L4H1 1573 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 GADD45BO75293 160 aaPredicted RBP16.65■□□□□ 0.26
HMGA1-203ENST00000374116 ENTPD3O75355 529 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 KIF20AO95235 890 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 ZSCAN20P17040 1043 aaPredicted RBP16.65■□□□□ 0.26
HMGA1-203ENST00000374116 PLCD1P51178 756 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 FKBP1CQ5VVH2 108 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 LARP1BQ659C4 914 aaKnown RBP16.65■□□□□ 0.26
HMGA1-203ENST00000374116 TCEANC2Q96MN5 208 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 AGXT2Q9BYV1 514 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 RBSNQ9H1K0 784 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 PASKQ96RG2 1323 aa16.65■□□□□ 0.26
HMGA1-203ENST00000374116 UBE2HP62256 183 aa16.64■□□□□ 0.25
HMGA1-203ENST00000374116 HTRA3P83110 453 aa16.64■□□□□ 0.25
HMGA1-203ENST00000374116 EXOSC10Q01780 885 aaKnown RBP16.64■□□□□ 0.25
HMGA1-203ENST00000374116 USP17L12C9JPN9 530 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 USP17L21D6R901 530 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 GTF2F1P35269 517 aaKnown RBP eCLIP16.63■□□□□ 0.25
HMGA1-203ENST00000374116 DHX32Q7L7V1 743 aaKnown RBP16.63■□□□□ 0.25
HMGA1-203ENST00000374116 IFNL3Q8IZI9 196 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 LAMA4Q16363 1823 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 VPS37CA5D8V6 355 aaPredicted RBP16.63■□□□□ 0.25
HMGA1-203ENST00000374116 PATL2C9JE40 543 aaKnown RBP16.63■□□□□ 0.25
HMGA1-203ENST00000374116 POLR3DP05423 398 aaPredicted RBP16.63■□□□□ 0.25
HMGA1-203ENST00000374116 TDO2P48775 406 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 FSTL1Q12841 308 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 TTLL12Q14166 644 aaPredicted RBP16.63■□□□□ 0.25
HMGA1-203ENST00000374116 CTR9Q6PD62 1173 aa16.63■□□□□ 0.25
HMGA1-203ENST00000374116 CERS3Q8IU89 383 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms