RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 CCDC87Q9NVE4 849 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 ZNF532Q9HCE3 1301 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 MED23Q9ULK4 1368 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 SETBP1Q9Y6X0 1596 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 ADGRL3Q9HAR2 1447 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 PTH1RQ03431 593 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 CCDC121Q6ZUS5 278 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 MSANTD4Q8NCY6 345 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 CABLES1Q8TDN4 633 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 ZNF496Q96IT1 587 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 TPCN1Q9ULQ1 816 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 NFE2L3Q9Y4A8 694 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 GNA14O95837 355 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 PCCAP05165 728 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 B4GALNT4Q76KP1 1039 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 CSGALNACT2Q8N6G5 542 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 KLHDC4Q8TBB5 520 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 NOX5Q96PH1 765 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 NACA2Q9H009 215 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 SPHKAPQ2M3C7 1700 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 CDC42BPBQ9Y5S2 1711 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 A0A1W2PRG0 241 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 JAK2O60674 1132 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 ZAP70P43403 619 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 BRD3Q15059 726 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 GPR161Q8N6U8 529 aaKnown RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 CCDC89Q8N998 374 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 SECISBP2LQ93073 1101 aaKnown RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 EAF2Q96CJ1 260 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 FRMD4BQ9Y2L6 1034 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 RHOXF2BP0C7M4 288 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 HOXA7P31268 230 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 WHAMMP3Q1A5X7 153 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 IFT20Q8IY31 132 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 TDRD7Q8NHU6 1098 aaKnown RBP10.06□□□□□ -0.8
SYNE1-205ENST00000367251 AFAP1L1Q8TED9 768 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 RHOXF2Q9BQY4 288 aa10.06□□□□□ -0.8
SYNE1-205ENST00000367251 A0A0D9SFI3 127 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 PSDA5PKW4 1024 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-205ENST00000367251 PICALMQ13492 652 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 TEX11Q8IYF3 940 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 ACSBG1Q96GR2 724 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 CAPZA3Q96KX2 299 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 RTEL1Q9NZ71 1219 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 PALD1Q9ULE6 856 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 NCAPD2Q15021 1401 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 CLTCL1P53675 1640 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 KIF22Q14807 665 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 LETM2Q2VYF4 491 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 KMT5BQ4FZB7 885 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 EAPPQ56P03 285 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-205ENST00000367251 ZKSCAN3Q9BRR0 538 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 UGGT1Q9NYU2 1555 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 REREQ9P2R6 1566 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 CTSWP56202 376 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 UBE3CQ15386 1083 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 SEL1L2Q5TEA6 688 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 NOSTRINQ8IVI9 506 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 ODF2LQ9ULJ1 636 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 TRAF5O00463 557 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 PFKFB1P16118 471 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 CCT6AP40227 531 aaKnown RBP10.05□□□□□ -0.8
SYNE1-205ENST00000367251 MAGEF1Q9HAY2 307 aa10.05□□□□□ -0.8
SYNE1-205ENST00000367251 PPP6R2O75170 966 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 DDAH1O94760 285 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 HSPD1P10809 573 aaKnown RBP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 NT5C2P49902 561 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 SLC9C1Q4G0N8 1177 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 KIFAP3Q92845 792 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 ZNF594Q96JF6 807 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 SWAP70Q9UH65 585 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 BCORL1Q5H9F3 1711 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 ANKARQ7Z5J8 1434 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 CETN3O15182 167 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 ADCY7P51828 1080 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 SP4Q02446 784 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 PPARAQ07869 468 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 ASIC2Q16515 512 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 FAM173BQ6P4H8 233 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 ZBTB38Q8NAP3 1195 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 ATRIPQ8WXE1 791 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 MRVI1Q9Y6F6 885 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 MSL1Q68DK7 614 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 SYCE1Q8N0S2 351 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 CSRNP2Q9H175 543 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 VPS16Q9H269 839 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 RNF216Q9NWF9 866 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 GINS2Q9Y248 185 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 MADDQ8WXG6 1647 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 DKC1O60832 514 aaKnown RBP eCLIP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 NELFBQ8WX92 580 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 XPO4Q9C0E2 1151 aaKnown RBP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.04□□□□□ -0.8
SYNE1-205ENST00000367251 C8orf74Q6P047 294 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 TBC1D22AQ8WUA7 517 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 CARD6Q9BX69 1037 aa10.04□□□□□ -0.8
SYNE1-205ENST00000367251 CCNT1O60563 726 aaKnown RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 TAF5LO75529 589 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 ATP2A2P16615 1042 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms