RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TNKSO95271 1327 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 SSH2Q76I76 1423 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 IGBP1P78318 339 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 SYNMO15061 1565 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 SKILP12757 684 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 ERCC3P19447 782 aa13.03□□□□□ -0.32
SYNE1-204ENST00000367248 DCAF17Q5H9S7 520 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-204ENST00000367248 CLEC4GQ6UXB4 293 aa13.02□□□□□ -0.32
SYNE1-204ENST00000367248 SLC5A4Q9NY91 659 aa13.02□□□□□ -0.32
SYNE1-204ENST00000367248 EEF2P13639 858 aaKnown RBP13.02□□□□□ -0.32
SYNE1-204ENST00000367248 PPP1R2P41236 205 aa13.02□□□□□ -0.32
SYNE1-204ENST00000367248 IFI16Q16666 785 aaKnown RBP13.02□□□□□ -0.32
SYNE1-204ENST00000367248 LEKR1Q6ZMV7 388 aa13.02□□□□□ -0.32
SYNE1-204ENST00000367248 KCNJ14Q9UNX9 436 aa13.02□□□□□ -0.32
SYNE1-204ENST00000367248 FGAP02671 866 aa13.02□□□□□ -0.33
SYNE1-204ENST00000367248 REXO1Q8N1G1 1221 aaKnown RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 NAA15Q9BXJ9 866 aaKnown RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 JAK2O60674 1132 aa13.02□□□□□ -0.33
SYNE1-204ENST00000367248 DKC1O60832 514 aaKnown RBP eCLIP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 CERKLQ49MI3 558 aaPredicted RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 CEP135Q66GS9 1140 aa13.02□□□□□ -0.33
SYNE1-204ENST00000367248 TTLL6Q8N841 843 aa13.02□□□□□ -0.33
SYNE1-204ENST00000367248 ZSCAN10Q96SZ4 725 aaPredicted RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 NACA2Q9H009 215 aa13.02□□□□□ -0.33
SYNE1-204ENST00000367248 CWC15Q9P013 229 aaKnown RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 UTP14CQ5TAP6 766 aaKnown RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 CMTR1Q8N1G2 835 aaKnown RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 TLR7Q9NYK1 1049 aaKnown RBP13.02□□□□□ -0.33
SYNE1-204ENST00000367248 CUTAO60888 179 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 PTGS1P23219 599 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 CCDC117Q8IWD4 279 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-204ENST00000367248 NBPF3Q9H094 633 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 PRKAG2Q9UGJ0 569 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 CSRNP1Q96S65 589 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 ATP8A2Q9NTI2 1148 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 PIM2Q9P1W9 311 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 TRPC6Q9Y210 931 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 MYL5Q02045 173 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 ARHGEF16Q5VV41 709 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 ZNF274Q96GC6 653 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-204ENST00000367248 GOLGA8HP0CJ92 632 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 PTPN12Q05209 780 aaKnown RBP13.01□□□□□ -0.33
SYNE1-204ENST00000367248 CCDC93Q567U6 631 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 CC2D2BQ6DHV5 1058 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 FANCBQ8NB91 859 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 FNBP1Q96RU3 617 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 TNS3Q68CZ2 1445 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 MAP9Q49MG5 647 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 PNMA1Q8ND90 353 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 SNX29Q8TEQ0 813 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 H7C1W4 665 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 TBC1D10BQ4KMP7 808 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-204ENST00000367248 RNF34Q969K3 372 aa13.01□□□□□ -0.33
SYNE1-204ENST00000367248 MCM3P25205 808 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 ICA1Q05084 483 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 GTF3C6Q969F1 213 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 OSBPL3Q9H4L5 887 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 JADE2Q9NQC1 790 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 ZMYM1Q5SVZ6 1142 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 VPS54Q9P1Q0 977 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 PALD1Q9ULE6 856 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 USP31Q70CQ4 1352 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 TRAF5O00463 557 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 GDF11O95390 407 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 ACTN2P35609 894 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 PDE4DQ08499 809 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 SUSD4Q5VX71 490 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 ARMC9Q7Z3E5 817 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 CCDC42Q96M95 316 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 PLVAPQ9BX97 442 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 TBC1D7Q9P0N9 293 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 KRT19P08727 400 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 PDCL2Q8N4E4 241 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 TTLL11Q8NHH1 800 aa13□□□□□ -0.33
SYNE1-204ENST00000367248 EEPD1Q7L9B9 569 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 NCAPD2Q15021 1401 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 ARHGEF35A5YM69 484 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 KCNQ2O43526 872 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 KRT5P13647 590 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 ME3Q16798 604 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 IFT74Q96LB3 600 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 TET3O43151 1660 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 NEK11Q8NG66 645 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 LEO1Q8WVC0 666 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-204ENST00000367248 MAP4K1Q92918 833 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 SSX2IPQ9Y2D8 614 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 ABL1P00519 1130 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 SMTNP53814 917 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 MYSM1Q5VVJ2 828 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 GJD4Q96KN9 370 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-204ENST00000367248 TAOK3Q9H2K8 898 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 SMCO2A6NFE2 343 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 EZRP15311 586 aaKnown RBP12.99□□□□□ -0.33
SYNE1-204ENST00000367248 STRN3Q13033 797 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 GRAPQ13588 217 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 SPECC1Q5M775 1068 aa12.99□□□□□ -0.33
SYNE1-204ENST00000367248 GRAPLQ8TC17 118 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-204ENST00000367248 BCCIPQ9P287 314 aaKnown RBP eCLIP12.99□□□□□ -0.33
SYNE1-204ENST00000367248 UBXN1Q04323 297 aa12.98□□□□□ -0.33
SYNE1-204ENST00000367248 SLC10A4Q96EP9 437 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms