RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TFCP2Q12800 502 aa17.07■□□□□ 0.32
VPS29-201ENST00000360579 MTMR2Q13614 643 aa17.07■□□□□ 0.32
VPS29-201ENST00000360579 CCAR1Q8IX12 1150 aaKnown RBP17.07■□□□□ 0.32
VPS29-201ENST00000360579 GINM1Q9NU53 330 aa17.07■□□□□ 0.32
VPS29-201ENST00000360579 MTMR10Q9NXD2 777 aa17.07■□□□□ 0.32
VPS29-201ENST00000360579 PFASO15067 1338 aa17.06■□□□□ 0.32
VPS29-201ENST00000360579 BAG3O95817 575 aa17.06■□□□□ 0.32
VPS29-201ENST00000360579 HERVK_113P62684 666 aa17.06■□□□□ 0.32
VPS29-201ENST00000360579 Q7L0L9 218 aa17.06■□□□□ 0.32
VPS29-201ENST00000360579 P2RX7Q99572 595 aaKnown RBP17.06■□□□□ 0.32
VPS29-201ENST00000360579 NOB1Q9ULX3 412 aaKnown RBP17.06■□□□□ 0.32
VPS29-201ENST00000360579 DDX60LQ5H9U9 1706 aaKnown RBP17.06■□□□□ 0.32
VPS29-201ENST00000360579 UNC80Q8N2C7 3258 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 GNAI3P08754 354 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 COL6A1P12109 1028 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 PLCG2P16885 1265 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 ARID4AP29374 1257 aaPredicted RBP17.05■□□□□ 0.32
VPS29-201ENST00000360579 RGS2P41220 211 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 MTX1Q13505 466 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 RRP1BQ14684 758 aaKnown RBP17.05■□□□□ 0.32
VPS29-201ENST00000360579 TBC1D9Q6ZT07 1266 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 MEIS3Q99687 375 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 TRIM34Q9BYJ4 488 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 LRP2BPQ9P2M1 347 aa17.05■□□□□ 0.32
VPS29-201ENST00000360579 USP17L10C9JJH3 530 aa17.04■□□□□ 0.32
VPS29-201ENST00000360579 UQCRFS1P1P0C7P4 283 aa17.04■□□□□ 0.32
VPS29-201ENST00000360579 CACNB2Q08289 660 aaPredicted RBP17.04■□□□□ 0.32
VPS29-201ENST00000360579 FOXP4Q8IVH2 680 aaPredicted RBP17.04■□□□□ 0.32
VPS29-201ENST00000360579 ERVK-9P63128 1117 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 ERVK-24P63145 666 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 PI16Q6UXB8 463 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 CRACR2BQ8N4Y2 399 aaPredicted RBP17.03■□□□□ 0.32
VPS29-201ENST00000360579 SH3RF3Q8TEJ3 882 aaPredicted RBP17.03■□□□□ 0.32
VPS29-201ENST00000360579 USP6NLQ92738 828 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 APBA2Q99767 749 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 CWC22Q9HCG8 908 aaKnown RBP17.03■□□□□ 0.32
VPS29-201ENST00000360579 TXNRD2Q9NNW7 524 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 RBPJLQ9UBG7 517 aa17.03■□□□□ 0.32
VPS29-201ENST00000360579 IGSF3O75054 1194 aa17.02■□□□□ 0.32
VPS29-201ENST00000360579 GLRX3O76003 335 aaKnown RBP17.02■□□□□ 0.32
VPS29-201ENST00000360579 LHX8Q68G74 356 aa17.02■□□□□ 0.32
VPS29-201ENST00000360579 GPR142Q7Z601 462 aa17.02■□□□□ 0.32
VPS29-201ENST00000360579 PLEKHH3Q7Z736 793 aa17.02■□□□□ 0.32
VPS29-201ENST00000360579 METTL16Q86W50 562 aaKnown RBP17.02■□□□□ 0.32
VPS29-201ENST00000360579 ATAD5Q96QE3 1844 aa17.02■□□□□ 0.31
VPS29-201ENST00000360579 MCAMP43121 646 aa17.01■□□□□ 0.31
VPS29-201ENST00000360579 PPP4CP60510 307 aa17.01■□□□□ 0.31
VPS29-201ENST00000360579 LRRC26Q2I0M4 334 aa17.01■□□□□ 0.31
VPS29-201ENST00000360579 MORN1Q5T089 497 aa17.01■□□□□ 0.31
VPS29-201ENST00000360579 FAM109BQ6ICB4 259 aaPredicted RBP17.01■□□□□ 0.31
VPS29-201ENST00000360579 NAA16Q6N069 864 aaPredicted RBP17.01■□□□□ 0.31
VPS29-201ENST00000360579 ATF7IPQ6VMQ6 1270 aa17.01■□□□□ 0.31
VPS29-201ENST00000360579 AATFQ9NY61 560 aaKnown RBP eCLIP17.01■□□□□ 0.31
VPS29-201ENST00000360579 PLXNB2O15031 1838 aa17■□□□□ 0.31
VPS29-201ENST00000360579 HLA-DOAP06340 250 aa17■□□□□ 0.31
VPS29-201ENST00000360579 CCND3P30281 292 aaPredicted RBP17■□□□□ 0.31
VPS29-201ENST00000360579 CCNA1P78396 465 aa17■□□□□ 0.31
VPS29-201ENST00000360579 G3BP1Q13283 466 aaKnown RBP eCLIP17■□□□□ 0.31
VPS29-201ENST00000360579 USP17L2Q6R6M4 530 aa17■□□□□ 0.31
VPS29-201ENST00000360579 MAPKAPK5Q8IW41 473 aa17■□□□□ 0.31
VPS29-201ENST00000360579 TRMT2AQ8IZ69 625 aaKnown RBP17■□□□□ 0.31
VPS29-201ENST00000360579 TGFBRAP1Q8WUH2 860 aa17■□□□□ 0.31
VPS29-201ENST00000360579 ARHGAP45Q92619 1136 aa17■□□□□ 0.31
VPS29-201ENST00000360579 LBHD1Q9BQE6 289 aaPredicted RBP17■□□□□ 0.31
VPS29-201ENST00000360579 PAGR1Q9BTK6 254 aa17■□□□□ 0.31
VPS29-201ENST00000360579 PORCNQ9H237 461 aa17■□□□□ 0.31
VPS29-201ENST00000360579 DNAJC18Q9H819 358 aa17■□□□□ 0.31
VPS29-201ENST00000360579 ZBTB21Q9ULJ3 1066 aa17■□□□□ 0.31
VPS29-201ENST00000360579 FLT1P17948 1338 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 ZNF316A6NFI3 1004 aaPredicted RBP16.99■□□□□ 0.31
VPS29-201ENST00000360579 MSCO60682 206 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 MDM2Q00987 491 aaPredicted RBP16.99■□□□□ 0.31
VPS29-201ENST00000360579 MAP2K5Q13163 448 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 Q3C1V9 767 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 MFSD14CQ5VZR4 134 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 CDCA7LQ96GN5 454 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 RABGAP1Q9Y3P9 1069 aa16.99■□□□□ 0.31
VPS29-201ENST00000360579 PEX10O60683 326 aa16.98■□□□□ 0.31
VPS29-201ENST00000360579 GDF11O95390 407 aa16.98■□□□□ 0.31
VPS29-201ENST00000360579 JAG1P78504 1218 aa16.98■□□□□ 0.31
VPS29-201ENST00000360579 MKRN4PQ13434 485 aaPredicted RBP16.98■□□□□ 0.31
VPS29-201ENST00000360579 CCL14Q16627 93 aa16.98■□□□□ 0.31
VPS29-201ENST00000360579 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.98■□□□□ 0.31
VPS29-201ENST00000360579 EDC3Q96F86 508 aaKnown RBP16.98■□□□□ 0.31
VPS29-201ENST00000360579 EMILIN3Q9NT22 766 aa16.98■□□□□ 0.31
VPS29-201ENST00000360579 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.98■□□□□ 0.31
VPS29-201ENST00000360579 LAMA2P24043 3122 aaKnown RBP16.97■□□□□ 0.31
VPS29-201ENST00000360579 POTEB2H3BUK9 544 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 GNAI2P04899 355 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 CCDC158Q5M9N0 1113 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 TTC39AQ5SRH9 613 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 C12orf42Q96LP6 360 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 PRKAG2Q9UGJ0 569 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 PALD1Q9ULE6 856 aa16.97■□□□□ 0.31
VPS29-201ENST00000360579 USP17L15C9J2P7 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L13C9JLJ4 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L11C9JVI0 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L18D6R9N7 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L22D6RA61 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L17D6RBQ6 530 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms