RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PLXNB2O15031 1838 aa13.86□□□□□ -0.19
RTN3-204ENST00000354497 XRCC5P13010 732 aaKnown RBP13.85□□□□□ -0.19
RTN3-204ENST00000354497 CNGA1P29973 690 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 MAPK4P31152 587 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 HERVK_113P62684 666 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 MECOMQ03112 1051 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 RASGRF1Q13972 1273 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 RRP1BQ14684 758 aaKnown RBP13.85□□□□□ -0.19
RTN3-204ENST00000354497 SH3D19Q5HYK7 790 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 LHX8Q68G74 356 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 MRPL50Q8N5N7 158 aaKnown RBP13.85□□□□□ -0.19
RTN3-204ENST00000354497 MYLIPQ8WY64 445 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 TXNRD2Q9NNW7 524 aa13.85□□□□□ -0.19
RTN3-204ENST00000354497 CIAO1O76071 339 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 RHBDL3P58872 404 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 WDR78Q5VTH9 848 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 GPR142Q7Z601 462 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 PLEKHH3Q7Z736 793 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 APBA2Q99767 749 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 PRDM5Q9NQX1 630 aaPredicted RBP13.84□□□□□ -0.19
RTN3-204ENST00000354497 ATP11BQ9Y2G3 1177 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 COL2A1P02458 1487 aaPredicted RBP13.84□□□□□ -0.19
RTN3-204ENST00000354497 PTPRCP08575 1304 aa13.84□□□□□ -0.19
RTN3-204ENST00000354497 GPR75-ASB3A0A0A6YYF3 556 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 DEKP35659 375 aaKnown RBP13.83□□□□□ -0.2
RTN3-204ENST00000354497 IL15P40933 162 aaPredicted RBP13.83□□□□□ -0.2
RTN3-204ENST00000354497 ERVK-9P63128 1117 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 ERVK-24P63145 666 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 TEX11Q8IYF3 940 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 FAM163AQ96GL9 167 aaPredicted RBP13.83□□□□□ -0.2
RTN3-204ENST00000354497 TRIM34Q9BYJ4 488 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 PORCNQ9H237 461 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 PA2G4Q9UQ80 394 aaKnown RBP13.83□□□□□ -0.2
RTN3-204ENST00000354497 NDUFB9Q9Y6M9 179 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 ATAD5Q96QE3 1844 aa13.83□□□□□ -0.2
RTN3-204ENST00000354497 UBTFL1P0CB47 393 aaPredicted RBP13.82□□□□□ -0.2
RTN3-204ENST00000354497 FOSL2P15408 326 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 BACE1P56817 501 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 RTP1P59025 263 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 GSTO1P78417 241 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 Q3C1V9 767 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 MFSD14CQ5VZR4 134 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 SEMA6BQ9H3T3 888 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 RAI14Q9P0K7 980 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 RBPJLQ9UBG7 517 aa13.82□□□□□ -0.2
RTN3-204ENST00000354497 GDF11O95390 407 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 LDHCP07864 332 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 TIMM10P62072 90 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 SHHQ15465 462 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 MORN1Q5T089 497 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 USP6NLQ92738 828 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 NOL10Q9BSC4 688 aaKnown RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 HOXA7P31268 230 aaPredicted RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 MAP2K5Q13163 448 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 C9orf50Q5SZB4 431 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 CRACR2BQ8N4Y2 399 aaPredicted RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 SYMPKQ92797 1274 aaKnown RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 EDC3Q96F86 508 aaKnown RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 WDR18Q9BV38 432 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 DDX20Q9UHI6 824 aaKnown RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 HERC5Q9UII4 1024 aaKnown RBP13.81□□□□□ -0.2
RTN3-204ENST00000354497 MAST2Q6P0Q8 1798 aa13.81□□□□□ -0.2
RTN3-204ENST00000354497 USP17L10C9JJH3 530 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 GLRX3O76003 335 aaKnown RBP13.8□□□□□ -0.2
RTN3-204ENST00000354497 ASNSP08243 561 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 COL9A1P20849 921 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 ATP2B2Q01814 1243 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 MVPQ14764 893 aaKnown RBP13.8□□□□□ -0.2
RTN3-204ENST00000354497 ZYXQ15942 572 aaKnown RBP13.8□□□□□ -0.2
RTN3-204ENST00000354497 GORABQ5T7V8 394 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 TBC1D9Q6ZT07 1266 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 MIER1Q8N108 512 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 SH3RF3Q8TEJ3 882 aaPredicted RBP13.8□□□□□ -0.2
RTN3-204ENST00000354497 ZNF384Q8TF68 577 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 GTF3C2Q8WUA4 911 aaPredicted RBP13.8□□□□□ -0.2
RTN3-204ENST00000354497 XAGE2Q96GT9 111 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 NEUROD6Q96NK8 337 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 FLRT1Q9NZU1 646 aa13.8□□□□□ -0.2
RTN3-204ENST00000354497 PDS5AQ29RF7 1337 aaKnown RBP13.79□□□□□ -0.2
RTN3-204ENST00000354497 A0A1B0GUL7 405 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 C19orf81C9J6K1 198 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 DNM1LO00429 736 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 JAG1P78504 1218 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 SHROOM1Q2M3G4 852 aaPredicted RBP13.79□□□□□ -0.2
RTN3-204ENST00000354497 GJC2Q5T442 439 aaPredicted RBP13.79□□□□□ -0.2
RTN3-204ENST00000354497 PI16Q6UXB8 463 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 MAPKAPK5Q8IW41 473 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 BADQ92934 168 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 NSUN4Q96CB9 384 aaKnown RBP13.79□□□□□ -0.2
RTN3-204ENST00000354497 TTYH1Q9H313 450 aaPredicted RBP13.79□□□□□ -0.2
RTN3-204ENST00000354497 PI4KBQ9UBF8 816 aa13.79□□□□□ -0.2
RTN3-204ENST00000354497 MAP4K4O95819 1239 aaPredicted RBP13.78□□□□□ -0.2
RTN3-204ENST00000354497 CCNA1P78396 465 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 TFCP2Q12800 502 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 SPATA5Q8NB90 893 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 SSH1Q8WYL5 1049 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 LPAR1Q92633 364 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 FEZ1Q99689 392 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 HMG20BQ9P0W2 317 aa13.78□□□□□ -0.2
RTN3-204ENST00000354497 SPTBN5Q9NRC6 3674 aaKnown RBP13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms