RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 SHROOM1Q2M3G4 852 aaPredicted RBP17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 TRIM34Q9BYJ4 488 aa17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 GDF11O95390 407 aa17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 GINM1Q9NU53 330 aa17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 COLQQ9Y215 455 aaPredicted RBP17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 SGPL1O95470 568 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 HLA-DOAP06340 250 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 AACSQ86V21 672 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 ERC1Q8IUD2 1116 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 MAGEB6Q8N7X4 407 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 MIGA1Q8NAN2 632 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 ANTXR1Q9H6X2 564 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 TMOD4Q9NZQ9 345 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 TAOK2Q9UL54 1235 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 ZBTB21Q9ULJ3 1066 aa17.64■□□□□ 0.41
PRPF40A-201ENST00000354363 NAV1Q8NEY1 1877 aa17.63■□□□□ 0.41
PRPF40A-201ENST00000354363 ALPK3Q96L96 1907 aa17.63■□□□□ 0.41
PRPF40A-201ENST00000354363 HOXA7P31268 230 aaPredicted RBP17.63■□□□□ 0.41
PRPF40A-201ENST00000354363 DPF3Q92784 378 aa17.63■□□□□ 0.41
PRPF40A-201ENST00000354363 TRIOBPQ9H2D6 2365 aa17.63■□□□□ 0.41
PRPF40A-201ENST00000354363 DDX60LQ5H9U9 1706 aaKnown RBP17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 C19orf81C9J6K1 198 aa17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 USP17L10C9JJH3 530 aa17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 FARP2O94887 1054 aaPredicted RBP17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 IRX3P78415 501 aaPredicted RBP17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 CERS3Q8IU89 383 aa17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 MORF4L1Q9UBU8 362 aa17.62■□□□□ 0.41
PRPF40A-201ENST00000354363 USP5P45974 858 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 FXR1P51114 621 aaKnown RBP eCLIP17.61■□□□□ 0.415e-6■■■□□ 17
PRPF40A-201ENST00000354363 MAP3K12Q12852 859 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 P2RX7Q99572 595 aaKnown RBP17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 HTATIP2Q9BUP3 242 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 IL1RAPL2Q9NP60 686 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 PAK6Q9NQU5 681 aaPredicted RBP17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 GJD2Q9UKL4 321 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 HSP90AB4PQ58FF6 505 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 TMED8Q6PL24 325 aaPredicted RBP17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 RHPN1Q8TCX5 695 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 DEFB118Q96PH6 123 aa17.61■□□□□ 0.41
PRPF40A-201ENST00000354363 MYH8P13535 1937 aa17.6■□□□□ 0.41
PRPF40A-201ENST00000354363 HERVK_113P62684 666 aa17.6■□□□□ 0.41
PRPF40A-201ENST00000354363 PEX10O60683 326 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 GH2P01242 217 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 TFRCP02786 760 aaKnown RBP17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 HMGCRP04035 888 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 MS4A1P11836 297 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 CAPN2P17655 700 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 TATDN1Q6P1N9 297 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 CRISPLD2Q9H0B8 497 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 EHD4Q9H223 541 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 TXNRD2Q9NNW7 524 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 EMILIN3Q9NT22 766 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 SERPINB13Q9UIV8 391 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 MYH7P12883 1935 aa17.59■□□□□ 0.41
PRPF40A-201ENST00000354363 USP17L2Q6R6M4 530 aa17.58■□□□□ 0.41
PRPF40A-201ENST00000354363 RIOK1Q9BRS2 568 aaKnown RBP17.58■□□□□ 0.41
PRPF40A-201ENST00000354363 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.58■□□□□ 0.41
PRPF40A-201ENST00000354363 CHRDL2Q6WN34 429 aa17.58■□□□□ 0.4
PRPF40A-201ENST00000354363 TTC6Q86TZ1 520 aa17.58■□□□□ 0.4
PRPF40A-201ENST00000354363 RPAP2Q8IXW5 612 aaPredicted RBP17.58■□□□□ 0.4
PRPF40A-201ENST00000354363 GPRC5AQ8NFJ5 357 aa17.58■□□□□ 0.4
PRPF40A-201ENST00000354363 RBPJLQ9UBG7 517 aa17.58■□□□□ 0.4
PRPF40A-201ENST00000354363 BAZ2AQ9UIF9 1905 aaKnown RBP17.57■□□□□ 0.4
PRPF40A-201ENST00000354363 TRIM32Q13049 653 aa17.57■□□□□ 0.4
PRPF40A-201ENST00000354363 TTF1Q15361 905 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-201ENST00000354363 CLASRPQ8N2M8 674 aaKnown RBP17.57■□□□□ 0.4
PRPF40A-201ENST00000354363 KIF1BPQ96EK5 621 aa17.57■□□□□ 0.4
PRPF40A-201ENST00000354363 MAGEB6P1A0A0J9YX57 407 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 APBB1O00213 710 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 PDE6AP16499 860 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 ERVK-9P63128 1117 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 ERVK-24P63145 666 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 Q3C1V9 767 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 CERKLQ49MI3 558 aaPredicted RBP17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 POTEEQ6S8J3 1075 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 SIRT2Q8IXJ6 389 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 GTF3C2Q8WUA4 911 aaPredicted RBP17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 C12orf42Q96LP6 360 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 DDX19BQ9UMR2 479 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 COG6Q9Y2V7 657 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 NR2E3Q9Y5X4 410 aa17.56■□□□□ 0.4
PRPF40A-201ENST00000354363 RPTORQ8N122 1335 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 CYP2B6P20813 491 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 SHMT1P34896 483 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 PLCD1P51178 756 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 RAB3GAP1Q15042 981 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 ZYXQ15942 572 aaKnown RBP17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 ABCB5Q2M3G0 1257 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 SLC9C2Q5TAH2 1124 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 TRIB2Q92519 343 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 FEZ1Q99689 392 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 NUDT12Q9BQG2 462 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 ZBTB40Q9NUA8 1239 aa17.55■□□□□ 0.4
PRPF40A-201ENST00000354363 HMMRO75330 724 aa17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 MAPK4P31152 587 aa17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 SOCS4Q8WXH5 440 aa17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 PAWRQ96IZ0 340 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 PAGR1Q9BTK6 254 aa17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 PORCNQ9H237 461 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms