RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 LARGE1O95461 756 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 GOLGA8HP0CJ92 632 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 PSMA5P28066 241 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 CCDC83Q8IWF9 413 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 ESR2Q92731 530 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 WRNIP1Q96S55 665 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 PI4KBQ9UBF8 816 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 IQCA1LA6NCM1 817 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 RBM25P49756 843 aaKnown RBP10.84□□□□□ -0.67
USP4-202ENST00000351842 IKQ13123 557 aaPredicted RBP10.84□□□□□ -0.67
USP4-202ENST00000351842 SEPT2Q15019 361 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 CERKLQ49MI3 558 aaPredicted RBP10.84□□□□□ -0.67
USP4-202ENST00000351842 RUFY3Q7L099 469 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 TBC1D2Q9BYX2 928 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 ANGEL1Q9UNK9 670 aaKnown RBP10.84□□□□□ -0.67
USP4-202ENST00000351842 RFX7Q2KHR2 1363 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 KLF18A0A0U1RQI7 1052 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 POTECB2RU33 542 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 MCM5P33992 734 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 TNFAIP1Q13829 316 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 FEZ1Q99689 392 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 DNAJC18Q9H819 358 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 VAT1LQ9HCJ6 419 aa10.84□□□□□ -0.67
USP4-202ENST00000351842 TNKSO95271 1327 aa10.83□□□□□ -0.67
USP4-202ENST00000351842 GOLGA8BA8MQT2 603 aa10.83□□□□□ -0.68
USP4-202ENST00000351842 ZNF280AP59817 542 aaPredicted RBP10.83□□□□□ -0.68
USP4-202ENST00000351842 RABEP1Q15276 862 aa10.83□□□□□ -0.68
USP4-202ENST00000351842 IQCA1Q86XH1 822 aa10.83□□□□□ -0.68
USP4-202ENST00000351842 CNKSR2Q8WXI2 1034 aa10.83□□□□□ -0.68
USP4-202ENST00000351842 CLIP2Q9UDT6 1046 aa10.83□□□□□ -0.68
USP4-202ENST00000351842 RPS6KB1P23443 525 aa10.83□□□□□ -0.68
USP4-202ENST00000351842 HDLBPQ00341 1268 aaKnown RBP10.83□□□□□ -0.68
USP4-202ENST00000351842 RRP1BQ14684 758 aaKnown RBP10.83□□□□□ -0.68
USP4-202ENST00000351842 DHX32Q7L7V1 743 aaKnown RBP10.83□□□□□ -0.68
USP4-202ENST00000351842 RNF41Q9H4P4 317 aaPredicted RBP10.83□□□□□ -0.68
USP4-202ENST00000351842 CCDC69A6NI79 296 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 TRIM75PA6NK02 468 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 UBE2Q2LH0YL09 131 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 ANTXR2P58335 489 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 JAG1P78504 1218 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 IFIT1BQ5T764 474 aaKnown RBP10.82□□□□□ -0.68
USP4-202ENST00000351842 FAM151AQ8WW52 585 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 CEP95Q96GE4 821 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 MKRN1Q9UHC7 482 aaKnown RBP10.82□□□□□ -0.68
USP4-202ENST00000351842 RASA1P20936 1047 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 FKBP1AP62942 108 aaKnown RBP10.82□□□□□ -0.68
USP4-202ENST00000351842 KRT32Q14532 448 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 WTAPQ15007 396 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 NUP88Q99567 741 aaPredicted RBP10.82□□□□□ -0.68
USP4-202ENST00000351842 CNTNAP1P78357 1384 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 SART3Q15020 963 aaKnown RBP10.82□□□□□ -0.68
USP4-202ENST00000351842 TPCN1Q9ULQ1 816 aa10.82□□□□□ -0.68
USP4-202ENST00000351842 FRMPD2Q68DX3 1309 aaPredicted RBP10.82□□□□□ -0.68
USP4-202ENST00000351842 ABCB5Q2M3G0 1257 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 KRT23Q9C075 422 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 SHMT1P34896 483 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 ECE1P42892 770 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 SNAP25P60880 206 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 HTRA3P83110 453 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 HOMER1Q86YM7 354 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 CLMNQ96JQ2 1002 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 IDI2Q9BXS1 227 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 SLC12A7Q9Y666 1083 aa10.81□□□□□ -0.68
USP4-202ENST00000351842 CELF2O95319 508 aaKnown RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 GUCY1B3Q02153 619 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 BECN1Q14457 450 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 CCDC96Q2M329 555 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ENAHQ8N8S7 591 aaPredicted RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 ZSWIM6Q9HCJ5 1215 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 CABP5Q9NP86 173 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 GPCPD1Q9NPB8 672 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 CPLX1O14810 134 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ADD1P35611 737 aaKnown RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 ME3Q16798 604 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 MB21D2Q8IYB1 491 aaPredicted RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 ACER1Q8TDN7 264 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 STAG1Q8WVM7 1258 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 PHKBQ93100 1093 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 TMX3Q96JJ7 454 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 BRPF3Q9ULD4 1205 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ICA1Q05084 483 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ALX1Q15699 326 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 SYNE3Q6ZMZ3 975 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 APOBEC3FQ8IUX4 373 aaKnown RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 CDCA5Q96FF9 252 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 OTUD5Q96G74 571 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ZSCAN10Q96SZ4 725 aaPredicted RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 DHX36Q9H2U1 1008 aaKnown RBP10.8□□□□□ -0.68
USP4-202ENST00000351842 KAT14Q9H8E8 782 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 CNNM2Q9H8M5 875 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ELP3Q9H9T3 547 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 DOCK2Q92608 1830 aa10.8□□□□□ -0.68
USP4-202ENST00000351842 ENTPD3O75355 529 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 SLC16A2P36021 539 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 TOB2Q14106 344 aaPredicted RBP10.79□□□□□ -0.68
USP4-202ENST00000351842 USP17L2Q6R6M4 530 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 KCTD1Q719H9 257 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 UBA5Q9GZZ9 404 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 IL17RBQ9NRM6 502 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 PPP1R12BO60237 982 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms