RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 IQCA1Q86XH1 822 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 CCDC125Q86Z20 511 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 SH3GL3Q99963 347 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 RBM8AQ9Y5S9 174 aaKnown RBP13.48□□□□□ -0.25
RTN3-203ENST00000341307 CAPN7Q9Y6W3 813 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 NHSQ6T4R5 1651 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 UBN2Q6ZU65 1347 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 GOLGA6L4A6NEF3 574 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 INTS5Q6P9B9 1019 aaKnown RBP13.48□□□□□ -0.25
RTN3-203ENST00000341307 CDC37L1Q7L3B6 337 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 LEO1Q8WVC0 666 aaPredicted RBP13.48□□□□□ -0.25
RTN3-203ENST00000341307 GREM2Q9H772 168 aa13.48□□□□□ -0.25
RTN3-203ENST00000341307 TRMT112Q9UI30 125 aaKnown RBP13.48□□□□□ -0.25
RTN3-203ENST00000341307 LOC102724428A0A0B4J2F2 783 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 EPB41L2O43491 1005 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 AP1G2O75843 785 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 RDXP35241 583 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 SIK1P57059 783 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 CASP8Q14790 479 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 NECTIN1Q15223 517 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 AFAP1L1Q8TED9 768 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 SPATA32Q96LK8 384 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 JAKMIP1Q96N16 626 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 HAUS7Q99871 368 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 CCNL1Q9UK58 526 aaPredicted RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 TMCO5BA8MYB1 307 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 EBAG9O00559 213 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 SHOX2O60902 331 aaPredicted RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 PRPF6O94906 941 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 CRKLP46109 303 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 HSP90B2PQ58FF3 399 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 FAM177A1Q8N128 213 aaPredicted RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 AOPEPQ8N6M6 819 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 KIFC2Q96AC6 838 aa13.47□□□□□ -0.25
RTN3-203ENST00000341307 XPO4Q9C0E2 1151 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 TFIP11Q9UBB9 837 aaKnown RBP13.47□□□□□ -0.25
RTN3-203ENST00000341307 HIP1O00291 1037 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 RNF40O75150 1001 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 ADORA1P30542 326 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 IL6STP40189 918 aaPredicted RBP13.46□□□□□ -0.25
RTN3-203ENST00000341307 IFIT5Q13325 482 aaKnown RBP13.46□□□□□ -0.25
RTN3-203ENST00000341307 ARMC2Q8NEN0 867 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 TTLL11Q8NHH1 800 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 MICAL1Q8TDZ2 1067 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 MAP4K1Q92918 833 aa13.46□□□□□ -0.25
RTN3-203ENST00000341307 UTP14AQ9BVJ6 771 aaKnown RBP13.46□□□□□ -0.25
RTN3-203ENST00000341307 IRS4O14654 1257 aaPredicted RBP13.46□□□□□ -0.26
RTN3-203ENST00000341307 SKAP2O75563 359 aaPredicted RBP13.46□□□□□ -0.26
RTN3-203ENST00000341307 SYF2O95926 243 aaKnown RBP13.46□□□□□ -0.26
RTN3-203ENST00000341307 CSF1RP07333 972 aa13.46□□□□□ -0.26
RTN3-203ENST00000341307 ICA1Q05084 483 aa13.46□□□□□ -0.26
RTN3-203ENST00000341307 CREB3L3Q68CJ9 461 aa13.46□□□□□ -0.26
RTN3-203ENST00000341307 AMOTL1Q8IY63 956 aa13.46□□□□□ -0.26
RTN3-203ENST00000341307 DHX58Q96C10 678 aa13.46□□□□□ -0.26
RTN3-203ENST00000341307 SCAND2PQ9GZW5 306 aaPredicted RBP13.46□□□□□ -0.26
RTN3-203ENST00000341307 ZNF609O15014 1411 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 MED23Q9ULK4 1368 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 LRRIQ3A6PVS8 624 aaPredicted RBP13.45□□□□□ -0.26
RTN3-203ENST00000341307 COQ9O75208 318 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 ITGA6P23229 1130 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 ZNF827Q17R98 1081 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 MSANTD4Q8NCY6 345 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 BICD2Q8TD16 824 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 TCEANC2Q96MN5 208 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 ACBD3Q9H3P7 528 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 ZSWIM4Q9H7M6 989 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 SPATS2LQ9NUQ6 558 aaKnown RBP13.45□□□□□ -0.26
RTN3-203ENST00000341307 CCDC87Q9NVE4 849 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 CEP126Q9P2H0 1117 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 NUP98P52948 1817 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 FRMD3A2A2Y4 597 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 ANKRD18BA2A2Z9 1011 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 CIAO1O76071 339 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 RWDD2BP57060 319 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 PARD3BQ8TEW8 1205 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 SNRKQ9NRH2 765 aa13.45□□□□□ -0.26
RTN3-203ENST00000341307 SLC27A2O14975 620 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 CCT2P78371 535 aaKnown RBP13.44□□□□□ -0.26
RTN3-203ENST00000341307 R3HDM1Q15032 1099 aaKnown RBP13.44□□□□□ -0.26
RTN3-203ENST00000341307 KIRREL3Q8IZU9 778 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 LINC00116Q8NCU8 138 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 PLA2G12BQ9BX93 195 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 KIF9Q9HAQ2 790 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 PAG1Q9NWQ8 432 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 IFNKQ9P0W0 207 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 NRDCO43847 1150 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 TAF5LO75529 589 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 FSBPO95073 299 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 CTSWP56202 376 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 GNG11P61952 73 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 ANKRD18AQ8IVF6 992 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 CPSF2Q9P2I0 782 aaKnown RBP13.44□□□□□ -0.26
RTN3-203ENST00000341307 CDHR2Q9BYE9 1310 aa13.44□□□□□ -0.26
RTN3-203ENST00000341307 KINO60870 393 aaKnown RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 ERLIN1O75477 346 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 IFIT1P09914 478 aaKnown RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 RPS6KA3P51812 740 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 CLNS1AP54105 237 aaKnown RBP13.43□□□□□ -0.26
RTN3-203ENST00000341307 CHMP4BP1P59074 171 aa13.43□□□□□ -0.26
RTN3-203ENST00000341307 FKBP4Q02790 459 aaKnown RBP eCLIP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 583.8 ms