RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 GPATCH11Q8N954 259 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 MACROD2A1Z1Q3 448 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 ERVV-2B6SEH9 535 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 MTIF2P46199 727 aaKnown RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 LEKR1Q6ZMV7 388 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 MAPKAPK5Q8IW41 473 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 ZSCAN29Q8IWY8 852 aaPredicted RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 ACRBPQ8NEB7 543 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 SYMPKQ92797 1274 aaKnown RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 NGLY1Q96IV0 654 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 MEGF6O75095 1541 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 WDR17Q8IZU2 1322 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 RBM5P52756 815 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP1-201ENST00000339950 ETF1P62495 437 aaKnown RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 SF3A3Q12874 501 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP1-201ENST00000339950 PTGDRQ13258 359 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 JAKMIP3Q5VZ66 844 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 C8orf37Q96NL8 207 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 TEX13AQ9BXU3 409 aaPredicted RBP13.56□□□□□ -0.24
USP1-201ENST00000339950 UBA5Q9GZZ9 404 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 POLD4Q9HCU8 107 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 CEP131Q9UPN4 1083 aa13.56□□□□□ -0.24
USP1-201ENST00000339950 UBN2Q6ZU65 1347 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 KRT2P35908 639 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 FMR1Q06787 632 aaKnown RBP eCLIP13.55□□□□□ -0.244e-8■■■□□ 18.7
USP1-201ENST00000339950 KCTD19Q17RG1 926 aaPredicted RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 CDC5LQ99459 802 aaKnown RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 POLR3EQ9NVU0 708 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 MAN1B1Q9UKM7 699 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 PPP2R2CQ9Y2T4 447 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 KDM6AO15550 1401 aaPredicted RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 ANKRD26Q9UPS8 1709 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 PP2D1A8MPX8 630 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 MYO1BO43795 1136 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 PPP2R3AQ06190 1150 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 DIXDC1Q155Q3 683 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 C10orf67Q8IYJ2 551 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 ANKRD13CQ8N6S4 541 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 SLC44A5Q8NCS7 719 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 ENGASEQ8NFI3 743 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 IPO4Q8TEX9 1081 aaKnown RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 TMEM87BQ96K49 555 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 JADE2Q9NQC1 790 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 TBC1D7Q9P0N9 293 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 SRP68Q9UHB9 627 aaKnown RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 TRIM21P19474 475 aaKnown RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 BMS1Q14692 1282 aaKnown RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 TAF3Q5VWG9 929 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 SPTY2D1Q68D10 685 aaPredicted RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 METTL16Q86W50 562 aaKnown RBP13.55□□□□□ -0.24
USP1-201ENST00000339950 CALCOCO1Q9P1Z2 691 aa13.55□□□□□ -0.24
USP1-201ENST00000339950 CUTAO60888 179 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 DYMQ7RTS9 669 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 FEZ1Q99689 392 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 GOLGB1Q14789 3259 aaKnown RBP13.54□□□□□ -0.24
USP1-201ENST00000339950 RICTORQ6R327 1708 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 KRT18P05783 430 aaKnown RBP13.54□□□□□ -0.24
USP1-201ENST00000339950 CASP14P31944 242 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 WDR24Q96S15 920 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 EPB41L4AQ9HCS5 686 aaPredicted RBP13.54□□□□□ -0.24
USP1-201ENST00000339950 SPATA31D1Q6ZQQ2 1576 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 ITSN1Q15811 1721 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 H0YHG0 523 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 DEXIO95424 95 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 TSPY3P0CV98 308 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 TSPY8P0CW00 308 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 CRKLP46109 303 aaKnown RBP13.54□□□□□ -0.24
USP1-201ENST00000339950 TTC38Q5R3I4 469 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 SOGA3Q5TF21 947 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 CNNM2Q9H8M5 875 aa13.54□□□□□ -0.24
USP1-201ENST00000339950 KIF20AO95235 890 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 USP17L8P0C7I0 530 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 KRT9P35527 623 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 CASP7P55210 303 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 TFAP4Q01664 338 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 MMRN2Q9H8L6 949 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 RIPOR2Q9Y4F9 1068 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 AKR1B15C9JRZ8 316 aaPredicted RBP13.53□□□□□ -0.24
USP1-201ENST00000339950 PRDX5P30044 214 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 CLCN6P51797 869 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 ASIC1P78348 528 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 INF2Q27J81 1249 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 TSGA10IPQ3SY00 556 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 RILPL1Q5EBL4 403 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 KCNB2Q92953 911 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 LY9Q9HBG7 655 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 ARFGAP3Q9NP61 516 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 CWC15Q9P013 229 aaKnown RBP13.53□□□□□ -0.24
USP1-201ENST00000339950 VPS18Q9P253 973 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 A0A0U1RQJ8 604 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 KIF2AO00139 706 aaPredicted RBP13.53□□□□□ -0.24
USP1-201ENST00000339950 GNPATO15228 680 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 CCDC175P0C221 793 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 ERFEQ4G0M1 354 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 TDRD12Q587J7 1177 aaKnown RBP13.53□□□□□ -0.24
USP1-201ENST00000339950 FOXP4Q8IVH2 680 aaPredicted RBP13.53□□□□□ -0.24
USP1-201ENST00000339950 ATRIPQ8WXE1 791 aa13.53□□□□□ -0.24
USP1-201ENST00000339950 CCP110O43303 1012 aa13.52□□□□□ -0.24
USP1-201ENST00000339950 SPECC1LQ69YQ0 1117 aa13.52□□□□□ -0.24
USP1-201ENST00000339950 TGFBRAP1Q8WUH2 860 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms