RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 NAIF1Q69YI7 327 aaPredicted RBP17.97■□□□□ 0.47
NPHP3-201ENST00000337331 XAGE2Q96GT9 111 aa17.97■□□□□ 0.47
NPHP3-201ENST00000337331 PLEKHF1Q96S99 279 aa17.97■□□□□ 0.47
NPHP3-201ENST00000337331 LUC7L2Q9Y383 392 aaKnown RBP17.97■□□□□ 0.47
NPHP3-201ENST00000337331 ATP1A3P13637 1013 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 PTH1RQ03431 593 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 EAF2Q96CJ1 260 aaPredicted RBP17.96■□□□□ 0.47
NPHP3-201ENST00000337331 FUCA2Q9BTY2 467 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 FANCLQ9NW38 375 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.96■□□□□ 0.47
NPHP3-201ENST00000337331 JAG2Q9Y219 1238 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 MYO5CQ9NQX4 1742 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 KCNQ3O43525 872 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 KRT83P78385 493 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 ZNF174Q15697 407 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 ARMCX5Q6P1M9 558 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 DIS3L2Q8IYB7 885 aaKnown RBP17.96■□□□□ 0.47
NPHP3-201ENST00000337331 RTL9Q8NET4 1388 aa17.96■□□□□ 0.47
NPHP3-201ENST00000337331 H3BQF6 201 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 PPP1R12AO14974 1030 aaPredicted RBP17.95■□□□□ 0.46
NPHP3-201ENST00000337331 SF3B2Q13435 895 aaKnown RBP17.95■□□□□ 0.46
NPHP3-201ENST00000337331 WDR24Q96S15 920 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 ATP7AQ04656 1500 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 PLEKHG3A1L390 1219 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 SASH3O75995 380 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 TUBB2AQ13885 445 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 DTHD1Q6ZMT9 781 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 TUBB2BQ9BVA1 445 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 FUT8Q9BYC5 575 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 SAMD9LQ8IVG5 1584 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 ITGA6P23229 1130 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 DDB1Q16531 1140 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 SPECC1LQ69YQ0 1117 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 TMEM87BQ96K49 555 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 TAOK3Q9H2K8 898 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 NFE2L3Q9Y4A8 694 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 KIF24Q5T7B8 1368 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 GCC2Q8IWJ2 1684 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 CCT6AP40227 531 aaKnown RBP17.95■□□□□ 0.46
NPHP3-201ENST00000337331 STXBP4Q6ZWJ1 553 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 PGBD1Q96JS3 809 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 C6orf50Q9HD87 102 aa17.95■□□□□ 0.46
NPHP3-201ENST00000337331 CCDC122Q5T0U0 273 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 ARMC2Q8NEN0 867 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 MYL10Q9BUA6 226 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 VAV2P52735 878 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 KRT79Q5XKE5 535 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 ERMNQ8TAM6 284 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 PHKBQ93100 1093 aa17.94■□□□□ 0.46
NPHP3-201ENST00000337331 PRDM1O75626 825 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 TNNI2P48788 182 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 PICALMQ13492 652 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 PPP1R7Q15435 360 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 CNGA4Q8IV77 575 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 TRMT44Q8IYL2 757 aaKnown RBP17.93■□□□□ 0.46
NPHP3-201ENST00000337331 SLC35F6Q8N357 371 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 SLF1Q9BQI6 1058 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 OSBPL5Q9H0X9 879 aaPredicted RBP17.93■□□□□ 0.46
NPHP3-201ENST00000337331 POLR2DO15514 142 aaKnown RBP17.93■□□□□ 0.46
NPHP3-201ENST00000337331 ERCC3P19447 782 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 A0A0D9SFI3 127 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 GCOM1H8Y6P7 765 aaPredicted RBP17.93■□□□□ 0.46
NPHP3-201ENST00000337331 MYZAPP0CAP1 466 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 DESP17661 470 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 LRRC31Q6UY01 552 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 ARFGAP2Q8N6H7 521 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 SEC62Q99442 399 aaKnown RBP17.93■□□□□ 0.46
NPHP3-201ENST00000337331 IFI16Q16666 785 aaKnown RBP17.93■□□□□ 0.46
NPHP3-201ENST00000337331 SPDL1Q96EA4 605 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 ARMT1Q9H993 441 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 SLC52A2Q9HAB3 445 aa17.93■□□□□ 0.46
NPHP3-201ENST00000337331 ATP5JP18859 108 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 KIAA0753Q2KHM9 967 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 VPS16Q9H269 839 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 TTF2Q9UNY4 1162 aaKnown RBP17.92■□□□□ 0.46
NPHP3-201ENST00000337331 MAPK8IP1Q9UQF2 711 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 A6NNZ2 444 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 STX10O60499 249 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 SLC8A1P32418 973 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 IQCB1Q15051 598 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 TUBB8Q3ZCM7 444 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 EHMT1Q9H9B1 1298 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 V9GY48 417 aaPredicted RBP17.92■□□□□ 0.46
NPHP3-201ENST00000337331 CLTAP09496 248 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 WHAMMP3Q1A5X7 153 aa17.92■□□□□ 0.46
NPHP3-201ENST00000337331 GIGYF1O75420 1035 aaPredicted RBP17.91■□□□□ 0.46
NPHP3-201ENST00000337331 NDUFA8P51970 172 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 KRT40Q6A162 431 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 SAAL1Q96ER3 474 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 PLEKHG2Q9H7P9 1386 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 ENO4A6NNW6 628 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 DEXIO95424 95 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 RPUSD2Q8IZ73 545 aaKnown RBP17.91■□□□□ 0.46
NPHP3-201ENST00000337331 KIRREL3Q8IZU9 778 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 IRX2Q9BZI1 471 aaPredicted RBP17.91■□□□□ 0.46
NPHP3-201ENST00000337331 OSBPL3Q9H4L5 887 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 ZSWIM6Q9HCJ5 1215 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 CD248Q9HCU0 757 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 SH3TC1Q8TE82 1336 aa17.91■□□□□ 0.46
NPHP3-201ENST00000337331 RIN2Q8WYP3 895 aaPredicted RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms