RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 FAM71BQ8TC56 605 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 SECISBP2LQ93073 1101 aaKnown RBP12.85□□□□□ -0.35
VPS39-201ENST00000318006 KCNH3Q9ULD8 1083 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 UNC13BO14795 1591 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 E7EVH7 732 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 GNA11P29992 359 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 AP1ARQ63HQ0 302 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 TRMT1LQ7Z2T5 733 aaKnown RBP12.85□□□□□ -0.35
VPS39-201ENST00000318006 CNBD1Q8NA66 436 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 MTUS1Q9ULD2 1270 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 MTX1Q13505 466 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 VPS16Q9H269 839 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 NCOA5Q9HCD5 579 aaKnown RBP12.85□□□□□ -0.35
VPS39-201ENST00000318006 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
VPS39-201ENST00000318006 ROBO2Q9HCK4 1378 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 TBC1D8BQ0IIM8 1120 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 CCDC110Q8TBZ0 833 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 ZNF202O95125 648 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 SLC8A1P32418 973 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 RILPL1Q5EBL4 403 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 NFE2L3Q9Y4A8 694 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 NLRP1Q9C000 1473 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 USP6P35125 1406 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 PPP1R2P41236 205 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 GSTA5Q7RTV2 222 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 VSIG1Q86XK7 387 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS39-201ENST00000318006 BCAS4Q8TDM0 211 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 EAF2Q96CJ1 260 aaPredicted RBP12.84□□□□□ -0.35
VPS39-201ENST00000318006 ACTN4O43707 911 aaKnown RBP12.84□□□□□ -0.35
VPS39-201ENST00000318006 ZAP70P43403 619 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 PPP1R7Q15435 360 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 EYA3Q99504 573 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 DNAI2Q9GZS0 605 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 CLTCL1P53675 1640 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 SSH2Q76I76 1423 aa12.84□□□□□ -0.35
VPS39-201ENST00000318006 TAF5LO75529 589 aa12.83□□□□□ -0.35
VPS39-201ENST00000318006 DEXIO95424 95 aa12.83□□□□□ -0.35
VPS39-201ENST00000318006 MCM7P33993 719 aa12.83□□□□□ -0.35
VPS39-201ENST00000318006 TTLL12Q14166 644 aaPredicted RBP12.83□□□□□ -0.35
VPS39-201ENST00000318006 TTC6Q86TZ1 520 aa12.83□□□□□ -0.35
VPS39-201ENST00000318006 ERBB4Q15303 1308 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 MROH5Q6ZUA9 1318 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 PSDA5PKW4 1024 aaPredicted RBP12.83□□□□□ -0.36
VPS39-201ENST00000318006 KRT9P35527 623 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 KRT79Q5XKE5 535 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 CTNND2Q9UQB3 1225 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 PARP3Q9Y6F1 533 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 ABCC3O15438 1527 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 SYNRGQ9UMZ2 1314 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 GOLGA8KD6RF30 607 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 ARID4AP29374 1257 aaPredicted RBP12.83□□□□□ -0.36
VPS39-201ENST00000318006 CCDC174Q6PII3 467 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 DTHD1Q6ZMT9 781 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 CDC37L1Q7L3B6 337 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 EFCAB13Q8IY85 973 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 NOX5Q96PH1 765 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 DSCC1Q9BVC3 393 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 RIMBP2O15034 1052 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 TNNI2P48788 182 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 SMARCC2Q8TAQ2 1214 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 NUP58Q9BVL2 599 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 CAPS2Q9BXY5 557 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 ANAPC4Q9UJX5 808 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 PRR36Q9H6K5 1346 aa12.83□□□□□ -0.36
VPS39-201ENST00000318006 CUTAO60888 179 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 MTMR3Q13615 1198 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 ARHGEF25Q86VW2 580 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 FERMT2Q96AC1 680 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 EDC3Q96F86 508 aaKnown RBP12.82□□□□□ -0.36
VPS39-201ENST00000318006 RBM17Q96I25 401 aaKnown RBP12.82□□□□□ -0.36
VPS39-201ENST00000318006 FERMT1Q9BQL6 677 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 NOC4LQ9BVI4 516 aaKnown RBP12.82□□□□□ -0.36
VPS39-201ENST00000318006 VCX3BQ9H321 246 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.82□□□□□ -0.366e-7■■■□□ 18.5
VPS39-201ENST00000318006 TAOK1Q7L7X3 1001 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 TEX11Q8IYF3 940 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 RABGGTAQ92696 567 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 ZNF853P0CG23 659 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 SPATA5Q8NB90 893 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 UTP11Q9Y3A2 253 aaKnown RBP12.82□□□□□ -0.36
VPS39-201ENST00000318006 FYB2Q5VWT5 728 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 CCDC51Q96ER9 411 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 ANTXR1Q9H6X2 564 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 VEZTQ9HBM0 779 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 TSKSQ9UJT2 592 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 ATP6V0A2Q9Y487 856 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 SAR1BQ9Y6B6 198 aa12.82□□□□□ -0.36
VPS39-201ENST00000318006 BCORL1Q5H9F3 1711 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 TMEM110-MUSTN1A8MSY1 372 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 RNF10Q8N5U6 811 aaKnown RBP12.81□□□□□ -0.36
VPS39-201ENST00000318006 CCDC63Q8NA47 563 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 SPDYE3A6NKU9 549 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 UFL1O94874 794 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 SLF1Q9BQI6 1058 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 PDE11AQ9HCR9 933 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 PPP2R2CQ9Y2T4 447 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 JRKLQ9Y4A0 524 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 ZNF532Q9HCE3 1301 aa12.81□□□□□ -0.36
VPS39-201ENST00000318006 PARP1P09874 1014 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms