RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 FAM110CQ1W6H9 321 aa21.49■■□□□ 1.03
TPM1-203ENST00000317516 TATDN1Q6P1N9 297 aa21.49■■□□□ 1.03
TPM1-203ENST00000317516 BIN2Q9UBW5 565 aaPredicted RBP21.49■■□□□ 1.03
TPM1-203ENST00000317516 MAST2Q6P0Q8 1798 aa21.48■■□□□ 1.03
TPM1-203ENST00000317516 DOCK1Q14185 1865 aa21.48■■□□□ 1.03
TPM1-203ENST00000317516 MYCP01106 439 aaPredicted RBP21.48■■□□□ 1.03
TPM1-203ENST00000317516 IRX3P78415 501 aaPredicted RBP21.48■■□□□ 1.03
TPM1-203ENST00000317516 PRKCZQ05513 592 aa21.48■■□□□ 1.03
TPM1-203ENST00000317516 PRPF38BQ5VTL8 546 aaKnown RBP21.48■■□□□ 1.03
TPM1-203ENST00000317516 COA7Q96BR5 231 aa21.48■■□□□ 1.03
TPM1-203ENST00000317516 HAUS7Q99871 368 aa21.48■■□□□ 1.03
TPM1-203ENST00000317516 ASCC2Q9H1I8 757 aaPredicted RBP21.48■■□□□ 1.03
TPM1-203ENST00000317516 CABP5Q9NP86 173 aa21.48■■□□□ 1.03
TPM1-203ENST00000317516 GH2P01242 217 aa21.47■■□□□ 1.03
TPM1-203ENST00000317516 UBXN2AP68543 259 aa21.47■■□□□ 1.03
TPM1-203ENST00000317516 JAG1P78504 1218 aa21.47■■□□□ 1.03
TPM1-203ENST00000317516 CERKLQ49MI3 558 aaPredicted RBP21.47■■□□□ 1.03
TPM1-203ENST00000317516 SLAIN1Q8ND83 568 aa21.47■■□□□ 1.03
TPM1-203ENST00000317516 HOXA7P31268 230 aaPredicted RBP21.46■■□□□ 1.03
TPM1-203ENST00000317516 EDC3Q96F86 508 aaKnown RBP21.46■■□□□ 1.03
TPM1-203ENST00000317516 MCM9Q9NXL9 1143 aa21.46■■□□□ 1.03
TPM1-203ENST00000317516 TCRBV5S4A2TA0A5A2 114 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 FLT3LGP49771 235 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 PLCD1P51178 756 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 ABCB5Q2M3G0 1257 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 ZSCAN25Q6NSZ9 544 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 USP17L2Q6R6M4 530 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 NKX2-3Q8TAU0 364 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 GPATCH3Q96I76 525 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 DCTPP1Q9H773 170 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 GABRQQ9UN88 632 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 PDE4DIPQ5VU43 2346 aa21.45■■□□□ 1.02
TPM1-203ENST00000317516 KIAA0100Q14667 2235 aaKnown RBP21.44■■□□□ 1.02
TPM1-203ENST00000317516 HTTP42858 3142 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 SMARCA5O60264 1052 aaPredicted RBP21.44■■□□□ 1.02
TPM1-203ENST00000317516 ADD2P35612 726 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 IRF5Q13568 498 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 RAB3GAP1Q15042 981 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 FEZ1Q99689 392 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 ECHDC1Q9NTX5 307 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 TAOK2Q9UL54 1235 aa21.44■■□□□ 1.02
TPM1-203ENST00000317516 ADCY3O60266 1144 aa21.43■■□□□ 1.02
TPM1-203ENST00000317516 USP14P54578 494 aa21.43■■□□□ 1.02
TPM1-203ENST00000317516 UBE3CQ15386 1083 aa21.43■■□□□ 1.02
TPM1-203ENST00000317516 SHROOM1Q2M3G4 852 aaPredicted RBP21.43■■□□□ 1.02
TPM1-203ENST00000317516 PXYLP1Q8TE99 480 aa21.43■■□□□ 1.02
TPM1-203ENST00000317516 GTF3C2Q8WUA4 911 aaPredicted RBP21.43■■□□□ 1.02
TPM1-203ENST00000317516 DDRGK1Q96HY6 314 aa21.43■■□□□ 1.02
TPM1-203ENST00000317516 DCP1AQ9NPI6 582 aaPredicted RBP21.43■■□□□ 1.02
TPM1-203ENST00000317516 ATP8A2Q9NTI2 1148 aa21.43■■□□□ 1.02
TPM1-203ENST00000317516 AMOTL1Q8IY63 956 aa21.42■■□□□ 1.02
TPM1-203ENST00000317516 LCORLQ8N3X6 602 aa21.42■■□□□ 1.02
TPM1-203ENST00000317516 SDR42E1Q8WUS8 393 aa21.42■■□□□ 1.02
TPM1-203ENST00000317516 P2RX7Q99572 595 aaKnown RBP21.42■■□□□ 1.02
TPM1-203ENST00000317516 ARMT1Q9H993 441 aa21.42■■□□□ 1.02
TPM1-203ENST00000317516 MORF4L1Q9UBU8 362 aa21.42■■□□□ 1.02
TPM1-203ENST00000317516 MBD4O95243 580 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 SHMT1P34896 483 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 GABPAQ06546 454 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 MTFR1Q15390 333 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 GPRC5AQ8NFJ5 357 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 RNF208Q9H0X6 261 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 EMILIN3Q9NT22 766 aa21.41■■□□□ 1.02
TPM1-203ENST00000317516 GJB1P08034 283 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 CCL5P13501 91 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 HERVK_113P62684 666 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 C12orf42Q96LP6 360 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 KIAA1683Q9H0B3 1180 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 SWAP70Q9UH65 585 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 PHIPQ8WWQ0 1821 aa21.4■■□□□ 1.02
TPM1-203ENST00000317516 USP17L15C9J2P7 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L13C9JLJ4 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L11C9JVI0 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L18D6R9N7 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L22D6RA61 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L17D6RBQ6 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L19D6RCP7 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L20D6RJB6 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 USP17L24Q0WX57 530 aa21.39■■□□□ 1.01
TPM1-203ENST00000317516 CCAR1Q8IX12 1150 aaKnown RBP21.39■■□□□ 1.01
TPM1-203ENST00000317516 MYO5AQ9Y4I1 1855 aaKnown RBP21.39■■□□□ 1.01
TPM1-203ENST00000317516 MPHOSPH10O00566 681 aaKnown RBP21.38■■□□□ 1.01
TPM1-203ENST00000317516 CAPN2P17655 700 aa21.38■■□□□ 1.01
TPM1-203ENST00000317516 GJA8P48165 433 aa21.38■■□□□ 1.01
TPM1-203ENST00000317516 ZYXQ15942 572 aaKnown RBP21.38■■□□□ 1.01
TPM1-203ENST00000317516 TNRC18O15417 2968 aaPredicted RBP21.38■■□□□ 1.01
TPM1-203ENST00000317516 PRKAB2O43741 272 aa21.37■■□□□ 1.01
TPM1-203ENST00000317516 ELNP15502 786 aa21.37■■□□□ 1.01
TPM1-203ENST00000317516 RRP1P56182 461 aaKnown RBP21.37■■□□□ 1.01
TPM1-203ENST00000317516 SLC4A4Q9Y6R1 1079 aa21.37■■□□□ 1.01
TPM1-203ENST00000317516 PTPRFP10586 1907 aa21.37■■□□□ 1.01
TPM1-203ENST00000317516 INHAP05111 366 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 MAPK4P31152 587 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 SEPT2Q15019 361 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 LRRFIP1Q32MZ4 808 aaKnown RBP21.36■■□□□ 1.01
TPM1-203ENST00000317516 SLFNL1Q499Z3 407 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 TMEM179Q6ZVK1 233 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 ACER1Q8TDN7 264 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 CCDC17Q96LX7 622 aa21.36■■□□□ 1.01
TPM1-203ENST00000317516 RBPJLQ9UBG7 517 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms