RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 RABEP2Q9H5N1 569 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 ARHGEF10LQ9HCE6 1279 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 RBM28Q9NW13 759 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 GCKRQ14397 625 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 CWF19L2Q2TBE0 894 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 CATIPQ7Z7H3 387 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 CEP120Q8N960 986 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 CCDC63Q8NA47 563 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 IFT74Q96LB3 600 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 C3P01024 1663 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 VIMP08670 466 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 GBP1P32455 592 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 HPDP32754 393 aaPredicted RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 PSMC4P43686 418 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 IREB2P48200 963 aaKnown RBP9.2□□□□□ -0.94
VPS41-202ENST00000310301 PPP4R3AQ6IN85 833 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 CACNA2D3Q8IZS8 1091 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 PSMD1Q99460 953 aa9.2□□□□□ -0.94
VPS41-202ENST00000310301 MAGEB6P1A0A0J9YX57 407 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 PER1O15534 1290 aaPredicted RBP9.19□□□□□ -0.94
VPS41-202ENST00000310301 SPAG1Q07617 926 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 GRAPQ13588 217 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 TMEM67Q5HYA8 995 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 GRAPLQ8TC17 118 aaPredicted RBP9.19□□□□□ -0.94
VPS41-202ENST00000310301 TBC1D5Q92609 795 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 SPAG5Q96R06 1193 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 FAM114A2Q9NRY5 505 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 SDSP20132 328 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 GTF2IP78347 998 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 RPUSD2Q8IZ73 545 aaKnown RBP9.19□□□□□ -0.94
VPS41-202ENST00000310301 DNAI2Q9GZS0 605 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 HMG20BQ9P0W2 317 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 CCDC172P0C7W6 258 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 TPD52P55327 224 aaPredicted RBP9.19□□□□□ -0.94
VPS41-202ENST00000310301 MAP3K9P80192 1104 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 POTEAQ6S8J7 498 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 PNMA8AQ86V59 439 aaPredicted RBP9.19□□□□□ -0.94
VPS41-202ENST00000310301 MICU3Q86XE3 530 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 SMC5Q8IY18 1101 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 CD2APQ9Y5K6 639 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 CIB2O75838 187 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 BANK1Q8NDB2 785 aa9.19□□□□□ -0.94
VPS41-202ENST00000310301 CEP85LQ5SZL2 805 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 C17orf53Q8N3J3 647 aaPredicted RBP9.18□□□□□ -0.94
VPS41-202ENST00000310301 SNRKQ9NRH2 765 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 CD163L1Q9NR16 1453 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 GOLGA6CA6NDK9 693 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 GOLGA6DP0CG33 693 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 MARCKSP29966 332 aaPredicted RBP9.18□□□□□ -0.94
VPS41-202ENST00000310301 PRPHP41219 470 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 GSTA5Q7RTV2 222 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 GOLGA6AQ9NYA3 693 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 OAS2P29728 719 aaKnown RBP9.18□□□□□ -0.94
VPS41-202ENST00000310301 ECE1P42892 770 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 HAND2P61296 217 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 RGS22Q8NE09 1264 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 LMBR1Q8WVP7 490 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 MYCBPQ99417 103 aaPredicted RBP9.18□□□□□ -0.94
VPS41-202ENST00000310301 TTF2Q9UNY4 1162 aaKnown RBP9.18□□□□□ -0.94
VPS41-202ENST00000310301 PLEKHG2Q9H7P9 1386 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 TMEM110-MUSTN1A8MSY1 372 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 TSPY3P0CV98 308 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 TSPY8P0CW00 308 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 MAP7D1Q3KQU3 841 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 CCDC25Q86WR0 208 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 BRF1Q92994 677 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 CCDC42Q96M95 316 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 KAT14Q9H8E8 782 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 SPC25Q9HBM1 224 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 CNTNAP4Q9C0A0 1308 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 ARID5AQ03989 594 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 MFSD14BQ5SR56 506 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 SYCP3Q8IZU3 236 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 PPP1R9BQ96SB3 815 aa9.18□□□□□ -0.94
VPS41-202ENST00000310301 DEPDC5O75140 1603 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 LRRIQ1Q96JM4 1722 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 SOCS7O14512 581 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 STAT6P42226 847 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 UBXN1Q04323 297 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 BAG1Q99933 345 aaPredicted RBP9.17□□□□□ -0.94
VPS41-202ENST00000310301 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS41-202ENST00000310301 HACL1Q9UJ83 578 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 ARHGAP25P42331 645 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 PRKG1Q13976 671 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 PLS1Q14651 629 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 PNMA2Q9UL42 364 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 VAMP4O75379 141 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 ZWINTO95229 277 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 TNNC1P63316 161 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 HDAC1Q13547 482 aaPredicted RBP9.17□□□□□ -0.94
VPS41-202ENST00000310301 NEDD9Q14511 834 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 MRPL50Q8N5N7 158 aaKnown RBP9.17□□□□□ -0.94
VPS41-202ENST00000310301 RAB3IL1Q8TBN0 382 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 CARD6Q9BX69 1037 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 LRRC27Q9C0I9 530 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 ATP2A1O14983 1001 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 TSNAXIP1Q2TAA8 658 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 TTLL7Q6ZT98 887 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 FMNL3Q8IVF7 1028 aa9.17□□□□□ -0.94
VPS41-202ENST00000310301 NCOA7Q8NI08 942 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms