RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 CYB5R4Q7L1T6 521 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 KRT28Q7Z3Y7 464 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 GDAP1L1Q96MZ0 367 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 HOOK1Q9UJC3 728 aaKnown RBP12.35□□□□□ -0.43
ZNF558-201ENST00000301475 TTF2Q9UNY4 1162 aaKnown RBP12.35□□□□□ -0.43
ZNF558-201ENST00000301475 CDHR2Q9BYE9 1310 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 ACTN4O43707 911 aaKnown RBP12.35□□□□□ -0.43
ZNF558-201ENST00000301475 AKAP17AQ02040 695 aaKnown RBP12.35□□□□□ -0.43
ZNF558-201ENST00000301475 NTRK3Q16288 839 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 KLHL10Q6JEL2 608 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 APOA5Q6Q788 366 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 MICALL1Q8N3F8 863 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 ZNF594Q96JF6 807 aaPredicted RBP12.35□□□□□ -0.43
ZNF558-201ENST00000301475 DEF6Q9H4E7 631 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 VIPAS39Q9H9C1 493 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 MYO6Q9UM54 1294 aa12.35□□□□□ -0.43
ZNF558-201ENST00000301475 ANGEL1Q9UNK9 670 aaKnown RBP12.35□□□□□ -0.43
ZNF558-201ENST00000301475 RNF225M0QZC1 329 aaPredicted RBP12.34□□□□□ -0.43
ZNF558-201ENST00000301475 EXOC5O00471 708 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 CDC25AP30304 524 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 TEX2Q8IWB9 1127 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 SPATA20Q8TB22 786 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 MYL10Q9BUA6 226 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 GPR108Q9NPR9 543 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 TRIM10Q9UDY6 481 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 PHRF1Q9P1Y6 1649 aaKnown RBP12.34□□□□□ -0.43
ZNF558-201ENST00000301475 SYNRGQ9UMZ2 1314 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 A0A087WUV0 522 aaPredicted RBP12.34□□□□□ -0.43
ZNF558-201ENST00000301475 PTPREP23469 700 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 CASP1P29466 404 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 CDKAL1Q5VV42 579 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 MCTP2Q6DN12 878 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 TICAM2Q86XR7 235 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 TBC1D10CQ8IV04 446 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 GSPT2Q8IYD1 628 aaKnown RBP12.34□□□□□ -0.43
ZNF558-201ENST00000301475 TRIML1Q8N9V2 468 aa12.34□□□□□ -0.43
ZNF558-201ENST00000301475 ZNF496Q96IT1 587 aaPredicted RBP12.34□□□□□ -0.43
ZNF558-201ENST00000301475 SH2B2O14492 632 aaPredicted RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 GCP02774 474 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 ERCC5P28715 1186 aaPredicted RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 TRDNQ13061 729 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 SMYD4Q8IYR2 804 aaPredicted RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 EHD4Q9H223 541 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 WDR19Q8NEZ3 1342 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 BTBD18B2RXH4 712 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 ZNF213O14771 459 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 SHOX2O60902 331 aaPredicted RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 TUBBP07437 444 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 MYBL2P10244 700 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 CHRM1P11229 460 aaPredicted RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 LIG3P49916 1009 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 USP14P54578 494 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 EIF5P55010 431 aaKnown RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 CUL4BQ13620 913 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 SCARF1Q14162 830 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 CNGA4Q8IV77 575 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 NOSTRINQ8IVI9 506 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 GPATCH11Q8N954 259 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 FAM217BQ9NTX9 383 aaPredicted RBP12.33□□□□□ -0.44
ZNF558-201ENST00000301475 HDAC6Q9UBN7 1215 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 LAMB4A4D0S4 1761 aa12.33□□□□□ -0.44
ZNF558-201ENST00000301475 AGPSO00116 658 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 ZMYND10O75800 440 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 CDKL5O76039 1030 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 ADORA1P30542 326 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 GGCXP38435 758 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 IL15P40933 162 aaPredicted RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 SPATA1Q5VX52 437 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 CTCFLQ8NI51 663 aaPredicted RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 SMARCC1Q92922 1105 aaPredicted RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 SLF1Q9BQI6 1058 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 PUS3Q9BZE2 481 aaKnown RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 KAT14Q9H8E8 782 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 ZNF335Q9H4Z2 1342 aaPredicted RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 KDM6AO15550 1401 aaPredicted RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 ENC1O14682 589 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 GPAA1O43292 621 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 CCT5P48643 541 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 SWT1Q5T5J6 900 aaKnown RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 KCNV1Q6PIU1 500 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 PI16Q6UXB8 463 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 TRAPPC11Q7Z392 1133 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 CCDC148Q8NFR7 591 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 COG1Q8WTW3 980 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 ABHD10Q9NUJ1 306 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 REXO2Q9Y3B8 237 aaKnown RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 SLIT3O75094 1523 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 MYH7P12883 1935 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 MST1RQ04912 1400 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 A0A087X0B3 334 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 COBLO75128 1261 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 GUCY1A2P33402 732 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 CCT6AP40227 531 aaKnown RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 IARSP41252 1262 aaKnown RBP12.32□□□□□ -0.44
ZNF558-201ENST00000301475 DPYDQ12882 1025 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 TRIM29Q14134 588 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 MMS19Q96T76 1030 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 PCDHB6Q9Y5E3 794 aa12.32□□□□□ -0.44
ZNF558-201ENST00000301475 EYA2O00167 538 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms