RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 GPATCH3Q96I76 525 aa7.89□□□□□ -1.15
DEPDC4-201ENST00000299185 PAG1Q9NWQ8 432 aa7.89□□□□□ -1.15
DEPDC4-201ENST00000299185 ABCF2Q9UG63 623 aa7.89□□□□□ -1.15
DEPDC4-201ENST00000299185 ZNRF3Q9ULT6 936 aa7.89□□□□□ -1.15
DEPDC4-201ENST00000299185 DICER1Q9UPY3 1922 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-201ENST00000299185 FAM205AQ6ZU69 1335 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 A0A0D9SFI3 127 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 M0R2C6 588 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 HOXA2O43364 376 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 EGFRP00533 1210 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 GUCA2AQ02747 115 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 CIAPIN1Q6FI81 312 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 MRPL14Q6P1L8 145 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 SEC62Q99442 399 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 FSD1Q9BTV5 496 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 GNL3LQ9NVN8 582 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 RAI14Q9P0K7 980 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 DENND2AQ9ULE3 1009 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 SCAF8Q9UPN6 1271 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 AK9Q5TCS8 1911 aa7.88□□□□□ -1.15
DEPDC4-201ENST00000299185 USP17L3A6NCW0 530 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 USP17L4A6NCW7 530 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 FZD9O00144 591 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 DDNO94850 711 aaPredicted RBP7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 PDE6AP16499 860 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 DYNLL1P63167 89 aaKnown RBP7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 SH3BP2P78314 561 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 NMIQ13287 307 aaPredicted RBP7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 USP17L1Q7RTZ2 530 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 RETREG3Q86VR2 466 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 KCTD17Q8N5Z5 321 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 MAGEB6Q8N7X4 407 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 MIGA1Q8NAN2 632 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 TRPM4Q8TD43 1214 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 JDP2Q8WYK2 163 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 FAM227BQ96M60 508 aa7.87□□□□□ -1.15
DEPDC4-201ENST00000299185 MYH7P12883 1935 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 MAST3O60307 1309 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 ZNF532Q9HCE3 1301 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 ERC2O15083 957 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 GRIN3BO60391 1043 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 CACNB3P54284 484 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 EIF6P56537 245 aaKnown RBP7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 MECOMQ03112 1051 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 SLC4A8Q2Y0W8 1093 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 TTLL5Q6EMB2 1281 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 RSBN1LQ6PCB5 846 aaPredicted RBP7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 DZIP1Q86YF9 867 aaKnown RBP7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 GPIHBP1Q8IV16 184 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 TMEM151AQ8N4L1 468 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 ZNF512BQ96KM6 892 aaPredicted RBP7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 GMLQ99445 158 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 OSBPL3Q9H4L5 887 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 TTF2Q9UNY4 1162 aaKnown RBP7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 DAGLAQ9Y4D2 1042 aa7.86□□□□□ -1.15
DEPDC4-201ENST00000299185 PDS5AQ29RF7 1337 aaKnown RBP7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 TCRBV5S4A2TA0A5A2 114 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 SMIM22K7EJ46 135 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 RNF225M0QZC1 329 aaPredicted RBP7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 MBD4O95243 580 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 LDHBP07195 334 aaKnown RBP7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 CYP7A1P22680 504 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 EPS15P42566 896 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 TBC1D10BQ4KMP7 808 aaPredicted RBP7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 STRIP1Q5VSL9 837 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 DLK2Q6UY11 383 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 ERICH6Q7L0X2 663 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 PODNQ7Z5L7 613 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 ZNF589Q86UQ0 364 aaPredicted RBP7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 LCORLQ8N3X6 602 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 JMYQ8N9B5 988 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 KBTBD3Q8NAB2 608 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 ARMT1Q9H993 441 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 NMRK2Q9NPI5 230 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 LRP2BPQ9P2M1 347 aa7.85□□□□□ -1.15
DEPDC4-201ENST00000299185 MROH7-TTC4A0A0A0MT08 1334 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 SALL1Q9NSC2 1324 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 CLRN2A0PK11 232 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 PRKAB2O43741 272 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 VIL1P09327 827 aaKnown RBP7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 CCNYL3P0C7X3 344 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 SLURP2P0DP57 97 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 VARSP26640 1264 aaKnown RBP7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 ADD2P35612 726 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 BTDP43251 543 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 CFAP100Q494V2 611 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 BMP2KLQ5H9B9 411 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 NAA16Q6N069 864 aaPredicted RBP7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 CNTROBQ8N137 903 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 WDR66Q8TBY9 1149 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 OSBP2Q969R2 916 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 NSUN4Q96CB9 384 aaKnown RBP7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 EVI5LQ96CN4 794 aa7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 PUS7LQ9H0K6 701 aaKnown RBP7.84□□□□□ -1.15
DEPDC4-201ENST00000299185 DDX60LQ5H9U9 1706 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 NAV1Q8NEY1 1877 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 SOBPA7XYQ1 873 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 FOXP2O15409 715 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 RNF113AO15541 343 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms