RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 ZBTB22O15209 634 aa25.41■■□□□ 1.66
SMCO4-201ENST00000298966 LRIT3Q3SXY7 679 aa25.41■■□□□ 1.66
SMCO4-201ENST00000298966 SPTY2D1Q68D10 685 aaPredicted RBP25.41■■□□□ 1.66
SMCO4-201ENST00000298966 GPATCH3Q96I76 525 aa25.41■■□□□ 1.66
SMCO4-201ENST00000298966 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.41■■□□□ 1.66
SMCO4-201ENST00000298966 STXBP5LQ9Y2K9 1186 aa25.41■■□□□ 1.66
SMCO4-201ENST00000298966 LOC285556D6RIA3 1793 aa25.41■■□□□ 1.66
SMCO4-201ENST00000298966 TTC41PQ6P2S7 1318 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 TBC1D12O60347 775 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 EIF5BO60841 1220 aaKnown RBP25.4■■□□□ 1.66
SMCO4-201ENST00000298966 SYN1P17600 705 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 MX1P20591 662 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 SPP2Q13103 211 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 CCDC102BQ68D86 513 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 Q7L0L9 218 aa25.4■■□□□ 1.66
SMCO4-201ENST00000298966 OSBPL5Q9H0X9 879 aaPredicted RBP25.4■■□□□ 1.66
SMCO4-201ENST00000298966 MAGEA10P43363 369 aaPredicted RBP25.39■■□□□ 1.66
SMCO4-201ENST00000298966 PDE1AP54750 535 aa25.39■■□□□ 1.66
SMCO4-201ENST00000298966 C8orf34Q49A92 452 aa25.39■■□□□ 1.66
SMCO4-201ENST00000298966 TDHQ8IZJ6 230 aa25.39■■□□□ 1.66
SMCO4-201ENST00000298966 ZNF280CQ8ND82 737 aa25.39■■□□□ 1.66
SMCO4-201ENST00000298966 TBC1D2Q9BYX2 928 aa25.39■■□□□ 1.66
SMCO4-201ENST00000298966 GJD2Q9UKL4 321 aa25.39■■□□□ 1.66
SMCO4-201ENST00000298966 MROH7-TTC4A0A0A0MT08 1334 aa25.38■■□□□ 1.65
SMCO4-201ENST00000298966 ATAD5Q96QE3 1844 aa25.38■■□□□ 1.65
SMCO4-201ENST00000298966 ADORA1P30542 326 aa25.38■■□□□ 1.65
SMCO4-201ENST00000298966 TTC22Q5TAA0 569 aa25.38■■□□□ 1.65
SMCO4-201ENST00000298966 IL1RAPL2Q9NP60 686 aa25.38■■□□□ 1.65
SMCO4-201ENST00000298966 RBM19Q9Y4C8 960 aaKnown RBP25.38■■□□□ 1.65
SMCO4-201ENST00000298966 PDS5AQ29RF7 1337 aaKnown RBP25.37■■□□□ 1.65
SMCO4-201ENST00000298966 FAM196BA6NMK8 535 aa25.37■■□□□ 1.65
SMCO4-201ENST00000298966 IFIT2P09913 472 aaKnown RBP25.37■■□□□ 1.65
SMCO4-201ENST00000298966 HMGCS2P54868 508 aa25.37■■□□□ 1.65
SMCO4-201ENST00000298966 TRIM32Q13049 653 aa25.37■■□□□ 1.65
SMCO4-201ENST00000298966 RASGRF1Q13972 1273 aa25.37■■□□□ 1.65
SMCO4-201ENST00000298966 UBE2OQ9C0C9 1292 aaKnown RBP25.37■■□□□ 1.65
SMCO4-201ENST00000298966 ASCC2Q9H1I8 757 aaPredicted RBP25.37■■□□□ 1.65
SMCO4-201ENST00000298966 OGDHLQ9ULD0 1010 aa25.37■■□□□ 1.65
SMCO4-201ENST00000298966 NPM3O75607 178 aaKnown RBP25.36■■□□□ 1.65
SMCO4-201ENST00000298966 ERICH6Q7L0X2 663 aa25.36■■□□□ 1.65
SMCO4-201ENST00000298966 MTMR10Q9NXD2 777 aa25.36■■□□□ 1.65
SMCO4-201ENST00000298966 AKAP2Q9Y2D5 859 aa25.36■■□□□ 1.65
SMCO4-201ENST00000298966 GPR75-ASB3A0A0A6YYF3 556 aa25.35■■□□□ 1.65
SMCO4-201ENST00000298966 ERC2O15083 957 aa25.35■■□□□ 1.65
SMCO4-201ENST00000298966 PLXNB2O15031 1838 aa25.35■■□□□ 1.65
SMCO4-201ENST00000298966 RHBDL3P58872 404 aa25.34■■□□□ 1.65
SMCO4-201ENST00000298966 AACSQ86V21 672 aa25.34■■□□□ 1.65
SMCO4-201ENST00000298966 TRIB2Q92519 343 aa25.34■■□□□ 1.65
SMCO4-201ENST00000298966 AS3MTQ9HBK9 375 aa25.34■■□□□ 1.65
SMCO4-201ENST00000298966 MORF4L1Q9UBU8 362 aa25.34■■□□□ 1.65
SMCO4-201ENST00000298966 USP17L5A8MUK1 530 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 MAP4K4O95819 1239 aaPredicted RBP25.33■■□□□ 1.65
SMCO4-201ENST00000298966 CYP2B6P20813 491 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 CAP2P40123 477 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 MECOMQ03112 1051 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 TNNI3KQ59H18 835 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 SH3D19Q5HYK7 790 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 FPGT-TNNI3KV9GXZ4 949 aa25.33■■□□□ 1.65
SMCO4-201ENST00000298966 GLRX3O76003 335 aaKnown RBP25.32■■□□□ 1.64
SMCO4-201ENST00000298966 LDHCP07864 332 aa25.32■■□□□ 1.64
SMCO4-201ENST00000298966 PRKAR2AP13861 404 aaKnown RBP25.32■■□□□ 1.64
SMCO4-201ENST00000298966 TIMM10P62072 90 aa25.32■■□□□ 1.64
SMCO4-201ENST00000298966 IRX3P78415 501 aaPredicted RBP25.32■■□□□ 1.64
SMCO4-201ENST00000298966 TFCP2Q12800 502 aa25.32■■□□□ 1.64
SMCO4-201ENST00000298966 OTUD7AQ8TE49 926 aaPredicted RBP25.32■■□□□ 1.64
SMCO4-201ENST00000298966 ECHDC1Q9NTX5 307 aa25.32■■□□□ 1.64
SMCO4-201ENST00000298966 COL2A1P02458 1487 aaPredicted RBP25.32■■□□□ 1.64
SMCO4-201ENST00000298966 GSTO1P78417 241 aa25.31■■□□□ 1.64
SMCO4-201ENST00000298966 MAP3K21Q5TCX8 1036 aa25.31■■□□□ 1.64
SMCO4-201ENST00000298966 SOCS4Q8WXH5 440 aa25.31■■□□□ 1.64
SMCO4-201ENST00000298966 EAF2Q96CJ1 260 aaPredicted RBP25.31■■□□□ 1.64
SMCO4-201ENST00000298966 NUDT12Q9BQG2 462 aa25.31■■□□□ 1.64
SMCO4-201ENST00000298966 TRMT44Q8IYL2 757 aaKnown RBP25.3■■□□□ 1.64
SMCO4-201ENST00000298966 PFASO15067 1338 aa25.3■■□□□ 1.64
SMCO4-201ENST00000298966 XRCC5P13010 732 aaKnown RBP25.29■■□□□ 1.64
SMCO4-201ENST00000298966 XAGE2Q96GT9 111 aa25.29■■□□□ 1.64
SMCO4-201ENST00000298966 TMOD4Q9NZQ9 345 aa25.29■■□□□ 1.64
SMCO4-201ENST00000298966 A0A1B0GUL7 405 aa25.28■■□□□ 1.64
SMCO4-201ENST00000298966 ZKSCAN1P17029 563 aaPredicted RBP25.28■■□□□ 1.64
SMCO4-201ENST00000298966 GPRC5AQ8NFJ5 357 aa25.28■■□□□ 1.64
SMCO4-201ENST00000298966 HERC5Q9UII4 1024 aaKnown RBP25.28■■□□□ 1.64
SMCO4-201ENST00000298966 GSPT1P15170 499 aaKnown RBP25.27■■□□□ 1.64
SMCO4-201ENST00000298966 RRP1BQ14684 758 aaKnown RBP25.27■■□□□ 1.64
SMCO4-201ENST00000298966 ZNF384Q8TF68 577 aa25.27■■□□□ 1.64
SMCO4-201ENST00000298966 P2RX7Q99572 595 aaKnown RBP25.27■■□□□ 1.64
SMCO4-201ENST00000298966 WDR18Q9BV38 432 aa25.27■■□□□ 1.64
SMCO4-201ENST00000298966 CDC45O75419 566 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 COL6A1P12109 1028 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 MTMR2Q13614 643 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 CASC1Q6TDU7 716 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 CCAR1Q8IX12 1150 aaKnown RBP25.26■■□□□ 1.63
SMCO4-201ENST00000298966 TEX11Q8IYF3 940 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 PI4K2BQ8TCG2 481 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 NSUN4Q96CB9 384 aaKnown RBP25.26■■□□□ 1.63
SMCO4-201ENST00000298966 RAI14Q9P0K7 980 aa25.26■■□□□ 1.63
SMCO4-201ENST00000298966 MAPK4P31152 587 aa25.25■■□□□ 1.63
SMCO4-201ENST00000298966 HOXA7P31268 230 aaPredicted RBP25.25■■□□□ 1.63
SMCO4-201ENST00000298966 BACE1P56817 501 aa25.25■■□□□ 1.63
SMCO4-201ENST00000298966 HERVK_113P62684 666 aa25.25■■□□□ 1.63
SMCO4-201ENST00000298966 BCL11AQ9H165 835 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms