RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IFIT1BQ5T764 474 aaKnown RBP23.11■■□□□ 1.29
VPS53-201ENST00000291074 VPS54Q9P1Q0 977 aa23.11■■□□□ 1.29
VPS53-201ENST00000291074 FAM205CA6NFA0 338 aa23.11■■□□□ 1.29
VPS53-201ENST00000291074 SLC4A8Q2Y0W8 1093 aa23.11■■□□□ 1.29
VPS53-201ENST00000291074 C16orf45Q96MC5 204 aaPredicted RBP23.11■■□□□ 1.29
VPS53-201ENST00000291074 TUBE1Q9UJT0 475 aa23.11■■□□□ 1.29
VPS53-201ENST00000291074 RTCBQ9Y3I0 505 aaKnown RBP23.11■■□□□ 1.29
VPS53-201ENST00000291074 FOXN1O15353 648 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 NMT2O60551 498 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 CYP2D6P10635 497 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 TPTE2Q6XPS3 522 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 DLEC1Q9Y238 1755 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 SEMA3EO15041 775 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 TM4SF1P30408 202 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 IFNKQ9P0W0 207 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 FBXO2Q9UK22 296 aaPredicted RBP23.1■■□□□ 1.29
VPS53-201ENST00000291074 CCDC88AQ3V6T2 1871 aa23.1■■□□□ 1.29
VPS53-201ENST00000291074 SMC2O95347 1197 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 LAMB1P07942 1786 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 PKN1Q16512 942 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 NHSQ6T4R5 1651 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 RNF26Q9BY78 433 aaPredicted RBP23.09■■□□□ 1.29
VPS53-201ENST00000291074 XPO4Q9C0E2 1151 aaKnown RBP23.09■■□□□ 1.29
VPS53-201ENST00000291074 CABP5Q9NP86 173 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 DCP1AQ9NPI6 582 aaPredicted RBP23.09■■□□□ 1.29
VPS53-201ENST00000291074 TAF1LQ8IZX4 1826 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 RGL2O15211 777 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 NPHP1O15259 732 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 FUT2Q10981 343 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 KRBA2Q6ZNG9 492 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 CNNM3Q8NE01 707 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 ANKRD2Q9GZV1 360 aa23.09■■□□□ 1.29
VPS53-201ENST00000291074 LMOD1P29536 600 aaPredicted RBP23.08■■□□□ 1.29
VPS53-201ENST00000291074 RILPL1Q5EBL4 403 aa23.08■■□□□ 1.29
VPS53-201ENST00000291074 FAM47AQ5JRC9 791 aa23.08■■□□□ 1.29
VPS53-201ENST00000291074 CATIPQ7Z7H3 387 aa23.08■■□□□ 1.29
VPS53-201ENST00000291074 IQCA1Q86XH1 822 aa23.08■■□□□ 1.29
VPS53-201ENST00000291074 FOXP4Q8IVH2 680 aaPredicted RBP23.08■■□□□ 1.29
VPS53-201ENST00000291074 FGRP09769 529 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 AKAP17AQ02040 695 aaKnown RBP23.07■■□□□ 1.28
VPS53-201ENST00000291074 TROAPQ12815 778 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 EARS2Q5JPH6 523 aaKnown RBP23.07■■□□□ 1.28
VPS53-201ENST00000291074 V9GY48 417 aaPredicted RBP23.07■■□□□ 1.28
VPS53-201ENST00000291074 SBF2Q86WG5 1849 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 UBAP1LF5GYI3 381 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 PTPREP23469 700 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 HSD3B7Q9H2F3 369 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 USP21Q9UK80 565 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.07■■□□□ 1.28
VPS53-201ENST00000291074 MAST2Q6P0Q8 1798 aa23.07■■□□□ 1.28
VPS53-201ENST00000291074 KIAA1551Q9HCM1 1747 aa23.06■■□□□ 1.28
VPS53-201ENST00000291074 ATP1A3P13637 1013 aa23.06■■□□□ 1.28
VPS53-201ENST00000291074 CRNKL1Q9BZJ0 848 aaKnown RBP23.06■■□□□ 1.28
VPS53-201ENST00000291074 USP27XA6NNY8 438 aa23.06■■□□□ 1.28
VPS53-201ENST00000291074 CCZ1BP86790 482 aa23.06■■□□□ 1.28
VPS53-201ENST00000291074 CCZ1P86791 482 aaPredicted RBP23.06■■□□□ 1.28
VPS53-201ENST00000291074 PCDHA5Q9Y5H7 936 aa23.06■■□□□ 1.28
VPS53-201ENST00000291074 RIOK3O14730 519 aaKnown RBP23.05■■□□□ 1.28
VPS53-201ENST00000291074 SKILP12757 684 aa23.05■■□□□ 1.28
VPS53-201ENST00000291074 FNBP4Q8N3X1 1017 aaPredicted RBP23.05■■□□□ 1.28
VPS53-201ENST00000291074 USP49Q70CQ1 688 aa23.05■■□□□ 1.28
VPS53-201ENST00000291074 PDS5AQ29RF7 1337 aaKnown RBP23.05■■□□□ 1.28
VPS53-201ENST00000291074 IRS2Q9Y4H2 1338 aa23.05■■□□□ 1.28
VPS53-201ENST00000291074 THSD7AQ9UPZ6 1657 aa23.05■■□□□ 1.28
VPS53-201ENST00000291074 POLR2DO15514 142 aaKnown RBP23.05■■□□□ 1.28
VPS53-201ENST00000291074 NOM1Q5C9Z4 860 aaKnown RBP23.04■■□□□ 1.28
VPS53-201ENST00000291074 TMC6Q7Z403 805 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 PDILTQ8N807 584 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 GPR101Q96P66 508 aaPredicted RBP23.04■■□□□ 1.28
VPS53-201ENST00000291074 SMTNL1A8MU46 457 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 WNT7AO00755 349 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 PRPF3O43395 683 aaKnown RBP23.04■■□□□ 1.28
VPS53-201ENST00000291074 PRR29P0C7W0 189 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 BMP6P22004 513 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 PPP2R5BQ15173 497 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 TPD52L1Q16890 204 aaPredicted RBP23.04■■□□□ 1.28
VPS53-201ENST00000291074 GRAMD1CQ8IYS0 662 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 PHF20Q9BVI0 1012 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 SERTAD1Q9UHV2 236 aa23.04■■□□□ 1.28
VPS53-201ENST00000291074 IKBKBO14920 756 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 GTF2F1P35269 517 aaKnown RBP eCLIP23.03■■□□□ 1.28
VPS53-201ENST00000291074 TPM4P67936 248 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 DZIP1Q86YF9 867 aaKnown RBP23.03■■□□□ 1.28
VPS53-201ENST00000291074 LY75O60449 1722 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 USP17L8P0C7I0 530 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 RFC4P35249 363 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 MDM2Q00987 491 aaPredicted RBP23.03■■□□□ 1.28
VPS53-201ENST00000291074 PDE4BQ07343 736 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 NFIXQ14938 502 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 TMTC3Q6ZXV5 915 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 ANKIB1Q9P2G1 1089 aa23.03■■□□□ 1.28
VPS53-201ENST00000291074 ORC4O43929 436 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 NEMFO60524 1076 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 PCP11498 1178 aaKnown RBP23.02■■□□□ 1.28
VPS53-201ENST00000291074 TNNT1P13805 278 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 KRT2P35908 639 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 FANCCQ00597 558 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 CSRNP2Q9H175 543 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 ATP8A2Q9NTI2 1148 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 RBM28Q9NW13 759 aaKnown RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms