RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 SLC3A2P08195 630 aaKnown RBP7.8□□□□□ -1.16
CD44-204ENST00000279452 ASNSP08243 561 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 CETPP11597 493 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 CTCFP49711 727 aaPredicted RBP7.8□□□□□ -1.16
CD44-204ENST00000279452 LBX1P52954 281 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 ZYXQ15942 572 aaKnown RBP7.8□□□□□ -1.16
CD44-204ENST00000279452 ABCB5Q2M3G0 1257 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 SHROOM1Q2M3G4 852 aaPredicted RBP7.8□□□□□ -1.16
CD44-204ENST00000279452 CTR9Q6PD62 1173 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 IFNL3Q8IZI9 196 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 MKNK2Q9HBH9 465 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 EPB41L4AQ9HCS5 686 aaPredicted RBP7.8□□□□□ -1.16
CD44-204ENST00000279452 TOMM22Q9NS69 142 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 RNF186Q9NXI6 227 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 SWAP70Q9UH65 585 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 ZBTB21Q9ULJ3 1066 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 DDX60LQ5H9U9 1706 aaKnown RBP7.8□□□□□ -1.16
CD44-204ENST00000279452 MYH7P12883 1935 aa7.8□□□□□ -1.16
CD44-204ENST00000279452 CCDC171Q6TFL3 1326 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 USP17L5A8MUK1 530 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 IGF2BP3O00425 579 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-204ENST00000279452 RAD21O60216 631 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 TBC1D8O95759 1140 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 ALDH1A1P00352 501 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 SHMT1P34896 483 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 INHBEP58166 350 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 ATP2B2Q01814 1243 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 MAP3K10Q02779 954 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 SPP2Q13103 211 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 MTMR2Q13614 643 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 RRP1BQ14684 758 aaKnown RBP7.79□□□□□ -1.16
CD44-204ENST00000279452 TAF1CQ15572 869 aaPredicted RBP7.79□□□□□ -1.16
CD44-204ENST00000279452 C12orf60Q5U649 245 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 VPS53Q5VIR6 699 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 ZNF589Q86UQ0 364 aaPredicted RBP7.79□□□□□ -1.16
CD44-204ENST00000279452 IFNL1Q8IU54 200 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 RUFY2Q8WXA3 655 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 BRI3BPQ8WY22 251 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 TMOD4Q9NZQ9 345 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 FOCADQ5VW36 1801 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 DOCK1Q14185 1865 aa7.79□□□□□ -1.16
CD44-204ENST00000279452 SMIM22K7EJ46 135 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 PRDM1O75626 825 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 ECM2O94769 699 aaPredicted RBP7.78□□□□□ -1.16
CD44-204ENST00000279452 HSPA8P11142 646 aaKnown RBP7.78□□□□□ -1.16
CD44-204ENST00000279452 TM4SF4P48230 202 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 CDK8P49336 464 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 HMGCS2P54868 508 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 PPARAQ07869 468 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 RRP12Q5JTH9 1297 aaKnown RBP7.78□□□□□ -1.16
CD44-204ENST00000279452 ERICH6BQ5W0A0 696 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 TATDN1Q6P1N9 297 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 GIMAP6Q6P9H5 292 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 CASC1Q6TDU7 716 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 C16orf86Q6ZW13 317 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 FASTKD5Q7L8L6 764 aaKnown RBP7.78□□□□□ -1.16
CD44-204ENST00000279452 ZNF280CQ8ND82 737 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 MS4A4AQ96JQ5 239 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 ZNF287Q9HBT7 754 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 SAGE1Q9NXZ1 904 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 AFG3L2Q9Y4W6 797 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 CDK5RAP2Q96SN8 1893 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 SIPA1L1O43166 1804 aa7.78□□□□□ -1.16
CD44-204ENST00000279452 A0A0G2JLL6 359 aaPredicted RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 BTBD19C9JJ37 291 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 USP17L10C9JJH3 530 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 PDHXO00330 501 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 CXCL11O14625 94 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 HSPD1P10809 573 aaKnown RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 AKR1B1P15121 316 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 HAND2P61296 217 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 JAG1P78504 1218 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 ICA1Q05084 483 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 CTDSPL2Q05D32 466 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 GABPAQ06546 454 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 PDE4BQ07343 736 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 CRHR2Q13324 411 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 DGKZQ13574 1117 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 SEPT2Q15019 361 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 SBK1Q52WX2 424 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 TMEM179Q6ZVK1 233 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 PRRT2Q7Z6L0 340 aaPredicted RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 METTL16Q86W50 562 aaKnown RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 TICAM2Q86XR7 235 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 CLEC10AQ8IUN9 316 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 ZNF444Q8N0Y2 327 aaPredicted RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 FAM43AQ8N2R8 423 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 SMCR8Q8TEV9 937 aaPredicted RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 PTPN18Q99952 460 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 TBC1D2Q9BYX2 928 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 ZFYVE28Q9HCC9 887 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 ARHGEF10LQ9HCE6 1279 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 GINM1Q9NU53 330 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 ISY1Q9ULR0 285 aaKnown RBP7.77□□□□□ -1.17
CD44-204ENST00000279452 KCNH4Q9UQ05 1017 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 MYH1P12882 1939 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 RAD50Q92878 1312 aa7.77□□□□□ -1.17
CD44-204ENST00000279452 ROBO3Q96MS0 1386 aa7.76□□□□□ -1.17
CD44-204ENST00000279452 TSPY2A6NKD2 308 aa7.76□□□□□ -1.17
CD44-204ENST00000279452 RANBP6O60518 1105 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms