RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TPM2P07951 284 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 GNL2Q13823 731 aaKnown RBP17.74■□□□□ 0.43
SF3B4-201ENST00000271628 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.74■□□□□ 0.43
SF3B4-201ENST00000271628 PODNQ7Z5L7 613 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 NBPF11Q86T75 865 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 TEX11Q8IYF3 940 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 RNF26Q9BY78 433 aaPredicted RBP17.74■□□□□ 0.43
SF3B4-201ENST00000271628 MKNK2Q9HBH9 465 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 POLR3EQ9NVU0 708 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 NAV1Q8NEY1 1877 aa17.74■□□□□ 0.43
SF3B4-201ENST00000271628 YEATS4O95619 227 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 TERF1P54274 439 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 TROAPQ12815 778 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 UVSSAQ2YD98 709 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 DGKHQ86XP1 1220 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 AIFM3Q96NN9 605 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 GJB4Q9NTQ9 266 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 ZKSCAN5Q9Y2L8 839 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 AKAP17AQ02040 695 aaKnown RBP17.73■□□□□ 0.43
SF3B4-201ENST00000271628 SAFBQ15424 915 aaKnown RBP eCLIP17.73■□□□□ 0.43
SF3B4-201ENST00000271628 FAM47AQ5JRC9 791 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 ZNF444Q8N0Y2 327 aaPredicted RBP17.73■□□□□ 0.43
SF3B4-201ENST00000271628 KCNG4Q8TDN1 519 aa17.73■□□□□ 0.43
SF3B4-201ENST00000271628 XBP1P17861 261 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 LIG1P18858 919 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 U2AF2P26368 475 aaKnown RBP eCLIP17.72■□□□□ 0.434e-8■■□□□ 14.1
SF3B4-201ENST00000271628 BAG6P46379 1132 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 OLFM4Q6UX06 510 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 MAPKAPK5Q8IW41 473 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 NUP62CLQ9H1M0 184 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 DACT1Q9NYF0 836 aa17.72■□□□□ 0.43
SF3B4-201ENST00000271628 RHBDL3P58872 404 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 TFAP4Q01664 338 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 EVX2Q03828 476 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 LINC00301Q8NCQ3 95 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 CTCFLQ8NI51 663 aaPredicted RBP17.71■□□□□ 0.43
SF3B4-201ENST00000271628 FBXW7Q969H0 707 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 TCP11L1Q9NUJ3 509 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 CDK5RAP2Q96SN8 1893 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 ME1P48163 572 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 DOK7Q18PE1 504 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 CC2D2BQ6DHV5 1058 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 CCDC82Q8N4S0 544 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 RNF214Q8ND24 703 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 FBXO41Q8TF61 875 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 ANKS1AQ92625 1134 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.71■□□□□ 0.43
SF3B4-201ENST00000271628 ECM29Q5VYK3 1845 aa17.71■□□□□ 0.43
SF3B4-201ENST00000271628 FLT1P17948 1338 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 KIF28PB7ZC32 967 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 STK38Q15208 465 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 SF3A1Q15459 793 aaKnown RBP17.7■□□□□ 0.42
SF3B4-201ENST00000271628 MAP3K11Q16584 847 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 ADALQ6DHV7 355 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 MAP3K14Q99558 947 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 FTOQ9C0B1 505 aaKnown RBP eCLIP17.7■□□□□ 0.42
SF3B4-201ENST00000271628 DAGLAQ9Y4D2 1042 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 PRPF3O43395 683 aaKnown RBP17.7■□□□□ 0.42
SF3B4-201ENST00000271628 MMP1P03956 469 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 TSPY3P0CV98 308 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 TSPY8P0CW00 308 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 PLCD1P51178 756 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 DYNLL2Q96FJ2 89 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 TNMDQ9H2S6 317 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 KAT14Q9H8E8 782 aa17.7■□□□□ 0.42
SF3B4-201ENST00000271628 TTF2Q9UNY4 1162 aaKnown RBP17.7■□□□□ 0.42
SF3B4-201ENST00000271628 NR1I2O75469 434 aa17.69■□□□□ 0.42
SF3B4-201ENST00000271628 KIF5BP33176 963 aa17.69■□□□□ 0.42
SF3B4-201ENST00000271628 FKBP1AP62942 108 aaKnown RBP17.69■□□□□ 0.42
SF3B4-201ENST00000271628 SLC4A8Q2Y0W8 1093 aa17.69■□□□□ 0.42
SF3B4-201ENST00000271628 ANO1Q5XXA6 986 aa17.69■□□□□ 0.42
SF3B4-201ENST00000271628 C16orf86Q6ZW13 317 aa17.69■□□□□ 0.42
SF3B4-201ENST00000271628 CCAR1Q8IX12 1150 aaKnown RBP17.69■□□□□ 0.42
SF3B4-201ENST00000271628 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.69■□□□□ 0.42
SF3B4-201ENST00000271628 FOXP1Q9H334 677 aaPredicted RBP17.69■□□□□ 0.42
SF3B4-201ENST00000271628 A0A1W2PQ27 194 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 A0A1W2PQ64 194 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 A0A1W2PQD8 194 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 SPTLC2O15270 562 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 NMT2O60551 498 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CCDC192P0DO97 292 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 GUCY1A2P33402 732 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 RCSD1Q6JBY9 416 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 HHIPL2Q6UWX4 724 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CCDC73Q6ZRK6 1079 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CMTR1Q8N1G2 835 aaKnown RBP17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CERS5Q8N5B7 392 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CLSTN2Q9H4D0 955 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 SAP30BPQ9UHR5 308 aaKnown RBP17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CLIC4Q9Y696 253 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 FOCADQ5VW36 1801 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 GRIPAP1Q4V328 841 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 TMTC3Q6ZXV5 915 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 FUCA2Q9BTY2 467 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 MRIQ9BWK5 157 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 PCDHA7Q9UN72 937 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 SLX4Q8IY92 1834 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 MYH6P13533 1939 aa17.68■□□□□ 0.42
SF3B4-201ENST00000271628 CTAGE5O15320 804 aa17.67■□□□□ 0.42
SF3B4-201ENST00000271628 CHRNA5P30532 468 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms