RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CST3P01034 146 aaPredicted RBP7□□□□□ -1.29
CCDC54-201ENST00000261058 PROCP04070 461 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 BMP3P12645 472 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 MAP4P27816 1152 aaKnown RBP7□□□□□ -1.29
CCDC54-201ENST00000261058 GATA4P43694 442 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 CASP7P55210 303 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 MLECQ14165 292 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 INTS3Q68E01 1043 aaKnown RBP7□□□□□ -1.29
CCDC54-201ENST00000261058 FBLIM1Q8WUP2 373 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 DHX38Q92620 1227 aaKnown RBP7□□□□□ -1.29
CCDC54-201ENST00000261058 ATG4CQ96DT6 458 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 TM9SF2Q99805 663 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 PICK1Q9NRD5 415 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 PRKAG3Q9UGI9 489 aa7□□□□□ -1.29
CCDC54-201ENST00000261058 KLF4O43474 513 aa6.99□□□□□ -1.29
CCDC54-201ENST00000261058 NFICP08651 508 aa6.99□□□□□ -1.29
CCDC54-201ENST00000261058 NME1P15531 152 aaKnown RBP6.99□□□□□ -1.29
CCDC54-201ENST00000261058 USP11P51784 963 aa6.99□□□□□ -1.29
CCDC54-201ENST00000261058 CPLX3Q8WVH0 158 aa6.99□□□□□ -1.29
CCDC54-201ENST00000261058 YIPF2Q9BWQ6 316 aa6.99□□□□□ -1.29
CCDC54-201ENST00000261058 CHURC1-FNTBB4DL54 471 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 DHX15O43143 795 aaKnown RBP6.98□□□□□ -1.29
CCDC54-201ENST00000261058 DYNC1LI2O43237 492 aaPredicted RBP6.98□□□□□ -1.29
CCDC54-201ENST00000261058 RNGTTO60942 597 aaKnown RBP6.98□□□□□ -1.29
CCDC54-201ENST00000261058 LRIG2O94898 1065 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 ACRP10323 421 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 RAB6AP20340 208 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 GTF2F1P35269 517 aaKnown RBP eCLIP6.98□□□□□ -1.29
CCDC54-201ENST00000261058 YARSP54577 528 aaKnown RBP6.98□□□□□ -1.29
CCDC54-201ENST00000261058 MAP7Q14244 749 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 NBPF6Q5VWK0 638 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 CDC37L1Q7L3B6 337 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 NLRC3Q7RTR2 1065 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 NBPF4Q96M43 638 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 CRBNQ96SW2 442 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 FAM83CQ9BQN1 747 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 HIRIP3Q9BW71 556 aaPredicted RBP6.98□□□□□ -1.29
CCDC54-201ENST00000261058 C1GALT1Q9NS00 363 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 MRVI1Q9Y6F6 885 aa6.98□□□□□ -1.29
CCDC54-201ENST00000261058 UPK3BL1B0FP48 263 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 UPK3BL2E5RIL1 263 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 STK10O94804 968 aaKnown RBP6.97□□□□□ -1.29
CCDC54-201ENST00000261058 GUCY2CP25092 1073 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 TNNI3KQ59H18 835 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 PRAMEF13Q5VWM6 474 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 ARMCX6Q7L4S7 300 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 CLEC10AQ8IUN9 316 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.97□□□□□ -1.29
CCDC54-201ENST00000261058 ANAPC16Q96DE5 110 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 FOXQ1Q9C009 403 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 USP35Q9P2H5 1018 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 DAGLAQ9Y4D2 1042 aa6.97□□□□□ -1.29
CCDC54-201ENST00000261058 FAM95CA0A1B0GW59 222 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 SMAD7O15105 426 aaKnown RBP6.96□□□□□ -1.3
CCDC54-201ENST00000261058 CCNFP41002 786 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 ARSHQ5FYA8 562 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 FBXW10Q5XX13 1052 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 RUFY4Q6ZNE9 571 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 BEND4Q6ZU67 534 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 MFSD2AQ8NA29 543 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 FAM13CQ8NE31 585 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 PPP1R13LQ8WUF5 828 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 CYB5D2Q8WUJ1 264 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 GATA6Q92908 595 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 TPSG1Q9NRR2 321 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 KLHL3Q9UH77 587 aa6.96□□□□□ -1.3
CCDC54-201ENST00000261058 COL17A1Q9UMD9 1497 aaPredicted RBP6.95□□□□□ -1.3
CCDC54-201ENST00000261058 RGS13O14921 159 aa6.95□□□□□ -1.3
CCDC54-201ENST00000261058 SERINC3Q13530 473 aa6.95□□□□□ -1.3
CCDC54-201ENST00000261058 PRR23CQ6ZRP0 262 aa6.95□□□□□ -1.3
CCDC54-201ENST00000261058 SLC9A7Q96T83 725 aa6.95□□□□□ -1.3
CCDC54-201ENST00000261058 A0A1W2PQH9 124 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 K7ELQ4 463 aaPredicted RBP6.94□□□□□ -1.3
CCDC54-201ENST00000261058 SOGA3Q5TF21 947 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 ANKS3Q6ZW76 656 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 DNAJB8Q8NHS0 232 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 TP53INP1Q96A56 240 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 DNAJC2Q99543 621 aaKnown RBP6.94□□□□□ -1.3
CCDC54-201ENST00000261058 DPH2Q9BQC3 489 aaPredicted RBP6.94□□□□□ -1.3
CCDC54-201ENST00000261058 TNKS2Q9H2K2 1166 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 PPP1R1BQ9UD71 204 aaPredicted RBP6.94□□□□□ -1.3
CCDC54-201ENST00000261058 RAXQ9Y2V3 346 aa6.94□□□□□ -1.3
CCDC54-201ENST00000261058 UBOX5O94941 541 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 H2AFB1P0C5Y9 115 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 H2AFB2P0C5Z0 115 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 RAB33AQ14088 237 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 PAOXQ6QHF9 649 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 TTC6Q86TZ1 520 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 CKAP2LQ8IYA6 745 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 CCDC74BQ96LY2 380 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 C7orf69Q9H7B7 122 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 SSU72Q9NP77 194 aaKnown RBP6.93□□□□□ -1.3
CCDC54-201ENST00000261058 HMX2A2RU54 273 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 SLITRK5O94991 958 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 RAG1P15918 1043 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 RXRBP28702 533 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 ZYXQ15942 572 aaKnown RBP6.93□□□□□ -1.3
CCDC54-201ENST00000261058 XP32Q5T750 250 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 UNC5AQ6ZN44 842 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 HNRNPLLQ8WVV9 542 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms