RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 TRIM17Q9Y577 477 aa27.68■■■□□ 2.02
LSM4-201ENST00000252816 CYP2D6P10635 497 aa27.67■■■□□ 2.02
LSM4-201ENST00000252816 GABPAQ06546 454 aa27.67■■■□□ 2.02
LSM4-201ENST00000252816 C17orf99Q6UX52 265 aa27.67■■■□□ 2.02
LSM4-201ENST00000252816 SMC5Q8IY18 1101 aa27.67■■■□□ 2.02
LSM4-201ENST00000252816 WDR18Q9BV38 432 aa27.67■■■□□ 2.02
LSM4-201ENST00000252816 HTTP42858 3142 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 CYP2C8P10632 490 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 SHMT1P34896 483 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 FBXO46Q6PJ61 603 aaPredicted RBP27.66■■■□□ 2.02
LSM4-201ENST00000252816 ATP8A2Q9NTI2 1148 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 GINM1Q9NU53 330 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 CPA4Q9UI42 421 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 HPS5Q9UPZ3 1129 aa27.66■■■□□ 2.02
LSM4-201ENST00000252816 RNF113AO15541 343 aaKnown RBP27.65■■■□□ 2.02
LSM4-201ENST00000252816 GH2P01242 217 aa27.65■■■□□ 2.02
LSM4-201ENST00000252816 HMGCS2P54868 508 aa27.65■■■□□ 2.02
LSM4-201ENST00000252816 TREML2Q5T2D2 321 aa27.65■■■□□ 2.02
LSM4-201ENST00000252816 OSBP2Q969R2 916 aa27.65■■■□□ 2.02
LSM4-201ENST00000252816 PARK7Q99497 189 aaKnown RBP27.65■■■□□ 2.02
LSM4-201ENST00000252816 AS3MTQ9HBK9 375 aa27.65■■■□□ 2.02
LSM4-201ENST00000252816 APPBP2Q92624 585 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 STRBPQ96SI9 672 aaKnown RBP27.64■■■□□ 2.02
LSM4-201ENST00000252816 LNPKQ9C0E8 428 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 EFCC1Q9HA90 598 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 STAP2Q9UGK3 403 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 AGTPBP1Q9UPW5 1226 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 SLC45A1Q9Y2W3 748 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 SLC4A4Q9Y6R1 1079 aa27.64■■■□□ 2.02
LSM4-201ENST00000252816 PDE1AP54750 535 aa27.63■■■□□ 2.01
LSM4-201ENST00000252816 IRX6P78412 446 aaPredicted RBP27.63■■■□□ 2.01
LSM4-201ENST00000252816 CERKLQ49MI3 558 aaPredicted RBP27.63■■■□□ 2.01
LSM4-201ENST00000252816 SH3D19Q5HYK7 790 aa27.63■■■□□ 2.01
LSM4-201ENST00000252816 B4GALNT3Q6L9W6 998 aa27.63■■■□□ 2.01
LSM4-201ENST00000252816 PROCA1Q8NCQ7 364 aaPredicted RBP27.63■■■□□ 2.01
LSM4-201ENST00000252816 ARHGAP39Q9C0H5 1083 aa27.63■■■□□ 2.01
LSM4-201ENST00000252816 SMIM22K7EJ46 135 aa27.62■■■□□ 2.01
LSM4-201ENST00000252816 ZFYP08048 801 aaPredicted RBP27.62■■■□□ 2.01
LSM4-201ENST00000252816 BACE1P56817 501 aa27.62■■■□□ 2.01
LSM4-201ENST00000252816 LACTBP83111 547 aaPredicted RBP27.62■■■□□ 2.01
LSM4-201ENST00000252816 MTMR2Q13614 643 aa27.62■■■□□ 2.01
LSM4-201ENST00000252816 CYP2D7A0A087X1C5 515 aa27.61■■■□□ 2.01
LSM4-201ENST00000252816 SLC44A5Q8NCS7 719 aa27.61■■■□□ 2.01
LSM4-201ENST00000252816 DYNLL2Q96FJ2 89 aa27.61■■■□□ 2.01
LSM4-201ENST00000252816 BAZ2AQ9UIF9 1905 aaKnown RBP27.61■■■□□ 2.01
LSM4-201ENST00000252816 LOC285556D6RIA3 1793 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 USP17L12C9JPN9 530 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 USP17L21D6R901 530 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 M0R2C6 588 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 BCRP11274 1271 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 ABCB5Q2M3G0 1257 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 C12orf60Q5U649 245 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 FSD1Q9BTV5 496 aa27.6■■■□□ 2.01
LSM4-201ENST00000252816 CTGFP29279 349 aa27.59■■■□□ 2.01
LSM4-201ENST00000252816 PTPN22Q9Y2R2 807 aa27.59■■■□□ 2.01
LSM4-201ENST00000252816 ZSWIM8A7E2V4 1837 aa27.59■■■□□ 2.01
LSM4-201ENST00000252816 USP17L10C9JJH3 530 aa27.58■■■□□ 2.01
LSM4-201ENST00000252816 GPAA1O43292 621 aa27.58■■■□□ 2.01
LSM4-201ENST00000252816 ECM2O94769 699 aaPredicted RBP27.58■■■□□ 2.01
LSM4-201ENST00000252816 GUCY1A2P33402 732 aa27.58■■■□□ 2.01
LSM4-201ENST00000252816 RAB3GAP1Q15042 981 aa27.58■■■□□ 2.01
LSM4-201ENST00000252816 CTR9Q6PD62 1173 aa27.58■■■□□ 2.01
LSM4-201ENST00000252816 SEC62Q99442 399 aaKnown RBP27.58■■■□□ 2.01
LSM4-201ENST00000252816 GSG1L2A8MUP6 293 aa27.57■■■□□ 2
LSM4-201ENST00000252816 NUCB1Q02818 461 aa27.57■■■□□ 2
LSM4-201ENST00000252816 LRRFIP1Q32MZ4 808 aaKnown RBP27.57■■■□□ 2
LSM4-201ENST00000252816 CHD1LQ86WJ1 897 aa27.57■■■□□ 2
LSM4-201ENST00000252816 DDRGK1Q96HY6 314 aa27.57■■■□□ 2
LSM4-201ENST00000252816 C19orf81C9J6K1 198 aa27.56■■■□□ 2
LSM4-201ENST00000252816 KIF22Q14807 665 aa27.56■■■□□ 2
LSM4-201ENST00000252816 ARHGEF6Q15052 776 aa27.56■■■□□ 2
LSM4-201ENST00000252816 CABP5Q9NP86 173 aa27.56■■■□□ 2
LSM4-201ENST00000252816 TMOD4Q9NZQ9 345 aa27.56■■■□□ 2
LSM4-201ENST00000252816 SWAP70Q9UH65 585 aa27.56■■■□□ 2
LSM4-201ENST00000252816 ZMYM1Q5SVZ6 1142 aa27.55■■■□□ 2
LSM4-201ENST00000252816 ACER1Q8TDN7 264 aa27.55■■■□□ 2
LSM4-201ENST00000252816 SMCR8Q8TEV9 937 aaPredicted RBP27.55■■■□□ 2
LSM4-201ENST00000252816 TRIM47Q96LD4 638 aa27.55■■■□□ 2
LSM4-201ENST00000252816 EMILIN3Q9NT22 766 aa27.55■■■□□ 2
LSM4-201ENST00000252816 PNMA3Q9UL41 463 aa27.55■■■□□ 2
LSM4-201ENST00000252816 PSMC4P43686 418 aa27.54■■■□□ 2
LSM4-201ENST00000252816 SEPT2Q15019 361 aa27.54■■■□□ 2
LSM4-201ENST00000252816 AMOTL1Q8IY63 956 aa27.54■■■□□ 2
LSM4-201ENST00000252816 EVI5LQ96CN4 794 aa27.54■■■□□ 2
LSM4-201ENST00000252816 ASCC2Q9H1I8 757 aaPredicted RBP27.54■■■□□ 2
LSM4-201ENST00000252816 EPB41L4AQ9HCS5 686 aaPredicted RBP27.54■■■□□ 2
LSM4-201ENST00000252816 TAOK2Q9UL54 1235 aa27.54■■■□□ 2
LSM4-201ENST00000252816 CENPFP49454 3210 aa27.53■■■□□ 2
LSM4-201ENST00000252816 CDK8P49336 464 aa27.53■■■□□ 2
LSM4-201ENST00000252816 PABPC4Q13310 644 aaKnown RBP eCLIP27.53■■■□□ 22e-14■■■■□ 19.6
LSM4-201ENST00000252816 GIMAP6Q6P9H5 292 aa27.53■■■□□ 2
LSM4-201ENST00000252816 USP17L2Q6R6M4 530 aa27.53■■■□□ 2
LSM4-201ENST00000252816 C16orf86Q6ZW13 317 aa27.53■■■□□ 2
LSM4-201ENST00000252816 MPHOSPH10O00566 681 aaKnown RBP27.52■■■□□ 2
LSM4-201ENST00000252816 AKR1B1P15121 316 aa27.52■■■□□ 2
LSM4-201ENST00000252816 OSBPP22059 807 aa27.52■■■□□ 2
LSM4-201ENST00000252816 HOXA7P31268 230 aaPredicted RBP27.52■■■□□ 2
LSM4-201ENST00000252816 SBK1Q52WX2 424 aa27.52■■■□□ 2
LSM4-201ENST00000252816 PLEKHM2Q8IWE5 1019 aa27.52■■■□□ 2
LSM4-201ENST00000252816 ARPP21Q9UBL0 812 aaPredicted RBP27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms