RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 UNC5CLQ8IV45 518 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 CNGA4Q8IV77 575 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 USP40Q9NVE5 1235 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 SLC27A2O14975 620 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 KIF5AQ12840 1032 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 SULF1Q8IWU6 871 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 NAP1L3Q99457 506 aaPredicted RBP14.24□□□□□ -0.13
USP40-201ENST00000251722 JADE2Q9NQC1 790 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 USP14P54578 494 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 P4HA1P13674 534 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 INPP5BP32019 993 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 ZSCAN26Q16670 478 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 USP26Q9BXU7 913 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 TRIM35Q9UPQ4 493 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 KRT26Q7Z3Y9 468 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 CCDC113Q9H0I3 377 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 RABGAP1Q9Y3P9 1069 aa14.24□□□□□ -0.13
USP40-201ENST00000251722 TET3O43151 1660 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 HOXA7P31268 230 aaPredicted RBP14.23□□□□□ -0.13
USP40-201ENST00000251722 ABCD1P33897 745 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 LETM2Q2VYF4 491 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 ERO1AQ96HE7 468 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 MTUS1Q9ULD2 1270 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 MFSD14BQ5SR56 506 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 LIN9Q5TKA1 542 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 EXOC8Q8IYI6 725 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 SLC17A8Q8NDX2 589 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 SMCR8Q8TEV9 937 aaPredicted RBP14.23□□□□□ -0.13
USP40-201ENST00000251722 CCDC42Q96M95 316 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 NUP58Q9BVL2 599 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 AATFQ9NY61 560 aaKnown RBP eCLIP14.23□□□□□ -0.13
USP40-201ENST00000251722 TTF2Q9UNY4 1162 aaKnown RBP14.23□□□□□ -0.13
USP40-201ENST00000251722 ARHGAP25P42331 645 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 TIMM10P62072 90 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 CDC42BPGQ6DT37 1551 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 TUBB2AQ13885 445 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 SUPT20HL1Q3ZLR7 823 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 TRMT1LQ7Z2T5 733 aaKnown RBP14.23□□□□□ -0.13
USP40-201ENST00000251722 ZNF354CQ86Y25 554 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 TUBB2BQ9BVA1 445 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 MMRN2Q9H8L6 949 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 DNM3Q9UQ16 869 aa14.23□□□□□ -0.13
USP40-201ENST00000251722 KDM6BO15054 1643 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 B4E1Z4 1266 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 ZNF500O60304 480 aaPredicted RBP14.22□□□□□ -0.13
USP40-201ENST00000251722 TRPC3Q13507 836 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 TACO1Q9BSH4 297 aaKnown RBP14.22□□□□□ -0.13
USP40-201ENST00000251722 RTEL1Q9NZ71 1219 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 FEZ2Q9UHY8 353 aaPredicted RBP14.22□□□□□ -0.13
USP40-201ENST00000251722 BCS1LQ9Y276 419 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 G2E3Q7L622 706 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 CCDC114Q96M63 670 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 IGSF1Q8N6C5 1336 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 hCG_1984214I3L0E3 225 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 SGSM2O43147 1006 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 FAM160A1Q05DH4 1040 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 AKNAD1Q5T1N1 836 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 ZNF713Q8N859 430 aaPredicted RBP14.22□□□□□ -0.13
USP40-201ENST00000251722 CETN3O15182 167 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 MARCKSP29966 332 aaPredicted RBP14.22□□□□□ -0.13
USP40-201ENST00000251722 ZNF532Q9HCE3 1301 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 A2ML1A8K2U0 1454 aa14.22□□□□□ -0.13
USP40-201ENST00000251722 PPEF1O14829 653 aaPredicted RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 DDAH1O94760 285 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 GOLGA5Q8TBA6 731 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 LUC7L2Q9Y383 392 aaKnown RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 ADCY10Q96PN6 1610 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 GNA14O95837 355 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 TTC38Q5R3I4 469 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 IQCGQ9H095 443 aaKnown RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 FOSP01100 380 aaPredicted RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 ZSCAN23Q3MJ62 389 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 DACT1Q9NYF0 836 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 CTAGE15A4D2H0 777 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 HSF2BPO75031 334 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 NR1I2O75469 434 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 CTAGE8P0CG41 777 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 ANO6Q4KMQ2 910 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 CTAGE6Q86UF2 777 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 CTAGE4Q8IX94 777 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 SLFN12Q8IYM2 578 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 LARP6Q9BRS8 491 aaKnown RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 TRIM6Q9C030 488 aaPredicted RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 NSRP1Q9H0G5 558 aaKnown RBP14.21□□□□□ -0.13
USP40-201ENST00000251722 CNPY2Q9Y2B0 182 aa14.21□□□□□ -0.13
USP40-201ENST00000251722 PPARAQ07869 468 aa14.21□□□□□ -0.14
USP40-201ENST00000251722 RTKN2Q8IZC4 609 aa14.21□□□□□ -0.14
USP40-201ENST00000251722 TTC14Q96N46 770 aa14.21□□□□□ -0.14
USP40-201ENST00000251722 VCXQ9H320 206 aa14.21□□□□□ -0.14
USP40-201ENST00000251722 ZNF408Q9H9D4 720 aa14.21□□□□□ -0.14
USP40-201ENST00000251722 ABCC4O15439 1325 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 NEDD9Q14511 834 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 KRT24Q2M2I5 525 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 LRRC23Q53EV4 343 aaPredicted RBP14.2□□□□□ -0.14
USP40-201ENST00000251722 C6orf163Q5TEZ5 329 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 SSH3Q8TE77 659 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 MRPS9P82933 396 aaKnown RBP14.2□□□□□ -0.14
USP40-201ENST00000251722 ANO1Q5XXA6 986 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 ABCC3O15438 1527 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms