RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 DDX19BQ9UMR2 479 aa25.64■■□□□ 1.7
NEDD8-201ENST00000250495 NDUFB9Q9Y6M9 179 aa25.64■■□□□ 1.7
NEDD8-201ENST00000250495 SIPA1L1O43166 1804 aa25.63■■□□□ 1.69
NEDD8-201ENST00000250495 HMMRO75330 724 aa25.63■■□□□ 1.69
NEDD8-201ENST00000250495 MTMR2Q13614 643 aa25.63■■□□□ 1.69
NEDD8-201ENST00000250495 CLASRPQ8N2M8 674 aaKnown RBP25.63■■□□□ 1.69
NEDD8-201ENST00000250495 CHMP4BQ9H444 224 aaKnown RBP25.63■■□□□ 1.69
NEDD8-201ENST00000250495 IL1RAPL2Q9NP60 686 aa25.63■■□□□ 1.69
NEDD8-201ENST00000250495 LOC285556D6RIA3 1793 aa25.63■■□□□ 1.69
NEDD8-201ENST00000250495 DOCK3Q8IZD9 2030 aa25.63■■□□□ 1.69
NEDD8-201ENST00000250495 USP17L10C9JJH3 530 aa25.62■■□□□ 1.69
NEDD8-201ENST00000250495 HOXA7P31268 230 aaPredicted RBP25.62■■□□□ 1.69
NEDD8-201ENST00000250495 TTF1Q15361 905 aaPredicted RBP25.62■■□□□ 1.69
NEDD8-201ENST00000250495 SHISA4Q96DD7 197 aa25.62■■□□□ 1.69
NEDD8-201ENST00000250495 KIF1BPQ96EK5 621 aa25.62■■□□□ 1.69
NEDD8-201ENST00000250495 GDF11O95390 407 aa25.61■■□□□ 1.69
NEDD8-201ENST00000250495 CAPN2P17655 700 aa25.61■■□□□ 1.69
NEDD8-201ENST00000250495 IRX3P78415 501 aaPredicted RBP25.61■■□□□ 1.69
NEDD8-201ENST00000250495 JAG1P78504 1218 aa25.61■■□□□ 1.69
NEDD8-201ENST00000250495 ZBTB21Q9ULJ3 1066 aa25.61■■□□□ 1.69
NEDD8-201ENST00000250495 ELNP15502 786 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 TTC6Q86TZ1 520 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 UNC93B1Q9H1C4 597 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 ZBTB40Q9NUA8 1239 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 PCDH10Q9P2E7 1040 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 TAOK2Q9UL54 1235 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 COG6Q9Y2V7 657 aa25.6■■□□□ 1.69
NEDD8-201ENST00000250495 MYH1P12882 1939 aa25.59■■□□□ 1.69
NEDD8-201ENST00000250495 INHAP05111 366 aa25.59■■□□□ 1.69
NEDD8-201ENST00000250495 HABP4Q5JVS0 413 aaKnown RBP25.59■■□□□ 1.69
NEDD8-201ENST00000250495 U2AF1L4Q8WU68 220 aaKnown RBP25.59■■□□□ 1.69
NEDD8-201ENST00000250495 SERPINB13Q9UIV8 391 aa25.59■■□□□ 1.69
NEDD8-201ENST00000250495 RAB11FIP3O75154 756 aa25.58■■□□□ 1.69
NEDD8-201ENST00000250495 SGPL1O95470 568 aa25.58■■□□□ 1.69
NEDD8-201ENST00000250495 IFIT2P09913 472 aaKnown RBP25.58■■□□□ 1.69
NEDD8-201ENST00000250495 TATDN1Q6P1N9 297 aa25.58■■□□□ 1.69
NEDD8-201ENST00000250495 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.58■■□□□ 1.69
NEDD8-201ENST00000250495 P2RX7Q99572 595 aaKnown RBP25.58■■□□□ 1.69
NEDD8-201ENST00000250495 EHD4Q9H223 541 aa25.58■■□□□ 1.69
NEDD8-201ENST00000250495 MORF4L1Q9UBU8 362 aa25.58■■□□□ 1.69
NEDD8-201ENST00000250495 APBB1O00213 710 aa25.57■■□□□ 1.68
NEDD8-201ENST00000250495 DPF3Q92784 378 aa25.57■■□□□ 1.68
NEDD8-201ENST00000250495 MAGEB6P1A0A0J9YX57 407 aa25.56■■□□□ 1.68
NEDD8-201ENST00000250495 GH2P01242 217 aa25.56■■□□□ 1.68
NEDD8-201ENST00000250495 SHROOM1Q2M3G4 852 aaPredicted RBP25.56■■□□□ 1.68
NEDD8-201ENST00000250495 SLC9C2Q5TAH2 1124 aa25.56■■□□□ 1.68
NEDD8-201ENST00000250495 USP17L2Q6R6M4 530 aa25.56■■□□□ 1.68
NEDD8-201ENST00000250495 RIOK1Q9BRS2 568 aaKnown RBP25.56■■□□□ 1.68
NEDD8-201ENST00000250495 HTATIP2Q9BUP3 242 aa25.56■■□□□ 1.68
NEDD8-201ENST00000250495 HERVK_113P62684 666 aa25.55■■□□□ 1.68
NEDD8-201ENST00000250495 SIRT2Q8IXJ6 389 aa25.55■■□□□ 1.68
NEDD8-201ENST00000250495 GPRC5AQ8NFJ5 357 aa25.55■■□□□ 1.68
NEDD8-201ENST00000250495 RCAN3Q9UKA8 241 aa25.55■■□□□ 1.68
NEDD8-201ENST00000250495 GJD2Q9UKL4 321 aa25.55■■□□□ 1.68
NEDD8-201ENST00000250495 TFRCP02786 760 aaKnown RBP25.54■■□□□ 1.68
NEDD8-201ENST00000250495 CERKLQ49MI3 558 aaPredicted RBP25.54■■□□□ 1.68
NEDD8-201ENST00000250495 UBE2Q1Q7Z7E8 422 aa25.54■■□□□ 1.68
NEDD8-201ENST00000250495 GTF3C2Q8WUA4 911 aaPredicted RBP25.54■■□□□ 1.68
NEDD8-201ENST00000250495 CABP5Q9NP86 173 aa25.54■■□□□ 1.68
NEDD8-201ENST00000250495 EMILIN3Q9NT22 766 aa25.54■■□□□ 1.68
NEDD8-201ENST00000250495 H0YGN5 161 aa25.53■■□□□ 1.68
NEDD8-201ENST00000250495 GOLIM4O00461 696 aa25.53■■□□□ 1.68
NEDD8-201ENST00000250495 POLR3DP05423 398 aaPredicted RBP25.53■■□□□ 1.68
NEDD8-201ENST00000250495 PDE6AP16499 860 aa25.53■■□□□ 1.68
NEDD8-201ENST00000250495 DNAJC2Q99543 621 aaKnown RBP25.53■■□□□ 1.68
NEDD8-201ENST00000250495 CRNKL1Q9BZJ0 848 aaKnown RBP25.53■■□□□ 1.68
NEDD8-201ENST00000250495 FARP2O94887 1054 aaPredicted RBP25.52■■□□□ 1.68
NEDD8-201ENST00000250495 RAB3GAP1Q15042 981 aa25.52■■□□□ 1.68
NEDD8-201ENST00000250495 ABCB5Q2M3G0 1257 aa25.52■■□□□ 1.68
NEDD8-201ENST00000250495 DEFB118Q96PH6 123 aa25.52■■□□□ 1.68
NEDD8-201ENST00000250495 BCL11AQ9H165 835 aa25.52■■□□□ 1.68
NEDD8-201ENST00000250495 PAK6Q9NQU5 681 aaPredicted RBP25.52■■□□□ 1.68
NEDD8-201ENST00000250495 HMGCRP04035 888 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 PLCD1P51178 756 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 USP14P54578 494 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 C12orf42Q96LP6 360 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 FEZ1Q99689 392 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 TXNRD2Q9NNW7 524 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 RBPJLQ9UBG7 517 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 ZNF532Q9HCE3 1301 aa25.51■■□□□ 1.67
NEDD8-201ENST00000250495 CCAR1Q8IX12 1150 aaKnown RBP25.5■■□□□ 1.67
NEDD8-201ENST00000250495 COLQQ9Y215 455 aaPredicted RBP25.5■■□□□ 1.67
NEDD8-201ENST00000250495 CEP290O15078 2479 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L15C9J2P7 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L13C9JLJ4 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L11C9JVI0 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L18D6R9N7 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L22D6RA61 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L17D6RBQ6 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L19D6RCP7 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L20D6RJB6 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 MAPK4P31152 587 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 USP17L24Q0WX57 530 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 NUDT12Q9BQG2 462 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 MCM9Q9NXL9 1143 aa25.49■■□□□ 1.67
NEDD8-201ENST00000250495 RPTORQ8N122 1335 aa25.48■■□□□ 1.67
NEDD8-201ENST00000250495 SHMT1P34896 483 aa25.48■■□□□ 1.67
NEDD8-201ENST00000250495 ERVK-9P63128 1117 aa25.48■■□□□ 1.67
NEDD8-201ENST00000250495 ERVK-24P63145 666 aa25.48■■□□□ 1.67
NEDD8-201ENST00000250495 PDE3AQ14432 1141 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms