RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ESR2Q92731 530 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 RTL9Q8NET4 1388 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 MINDY4BA8MYZ0 360 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 FMR1Q06787 632 aaKnown RBP eCLIP21.41■■□□□ 1.02
CPSF3-201ENST00000238112 TRIM65Q6PJ69 517 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 REXO1L1PQ8IX06 675 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 CCDC34Q96HJ3 373 aa21.41■■□□□ 1.02
CPSF3-201ENST00000238112 BAG1Q99933 345 aaPredicted RBP21.41■■□□□ 1.02
CPSF3-201ENST00000238112 ZNF827Q17R98 1081 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 PARP10Q53GL7 1025 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 SPECC1LQ69YQ0 1117 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 NUTM2AQ8IVF1 878 aaPredicted RBP21.4■■□□□ 1.02
CPSF3-201ENST00000238112 GRAMD1CQ8IYS0 662 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 RNF26Q9BY78 433 aaPredicted RBP21.4■■□□□ 1.02
CPSF3-201ENST00000238112 ZNF18P17022 549 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 TBX2Q13207 712 aaPredicted RBP21.4■■□□□ 1.02
CPSF3-201ENST00000238112 PPP2R5BQ15173 497 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 TMEM139Q8IV31 216 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 TRMT44Q8IYL2 757 aaKnown RBP21.4■■□□□ 1.02
CPSF3-201ENST00000238112 LRRN4CLQ8ND94 238 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 SRRTQ9BXP5 876 aaKnown RBP21.4■■□□□ 1.02
CPSF3-201ENST00000238112 CSRNP2Q9H175 543 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 PPP2R2CQ9Y2T4 447 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 TNKSO95271 1327 aa21.4■■□□□ 1.02
CPSF3-201ENST00000238112 ZNF335Q9H4Z2 1342 aaPredicted RBP21.4■■□□□ 1.02
CPSF3-201ENST00000238112 ACTN4O43707 911 aaKnown RBP21.39■■□□□ 1.02
CPSF3-201ENST00000238112 KIF20AO95235 890 aa21.39■■□□□ 1.02
CPSF3-201ENST00000238112 CHRNDQ07001 517 aa21.39■■□□□ 1.02
CPSF3-201ENST00000238112 MNS1Q8NEH6 495 aa21.39■■□□□ 1.02
CPSF3-201ENST00000238112 SDR42E1Q8WUS8 393 aa21.39■■□□□ 1.02
CPSF3-201ENST00000238112 CCDC87Q9NVE4 849 aa21.39■■□□□ 1.02
CPSF3-201ENST00000238112 URI1O94763 535 aaPredicted RBP21.39■■□□□ 1.01
CPSF3-201ENST00000238112 ABCF2Q9UG63 623 aa21.39■■□□□ 1.01
CPSF3-201ENST00000238112 A0A0G2JS52 829 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 MAGEB6P1A0A0J9YX57 407 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 GOLGA6L9A6NEM1 432 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 TRIM75PA6NK02 468 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 H2AFXP16104 143 aaPredicted RBP21.38■■□□□ 1.01
CPSF3-201ENST00000238112 ARHGAP29Q52LW3 1261 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 RAI14Q9P0K7 980 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 IQSEC3Q9UPP2 1182 aaPredicted RBP21.38■■□□□ 1.01
CPSF3-201ENST00000238112 STX10O60499 249 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 PLCD1P51178 756 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 INTS5Q6P9B9 1019 aaKnown RBP21.38■■□□□ 1.01
CPSF3-201ENST00000238112 UBXN4Q92575 508 aa21.38■■□□□ 1.01
CPSF3-201ENST00000238112 BCORQ6W2J9 1755 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 VWA3AA6NCI4 1184 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 IGSF3O75054 1194 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 SEC23AQ15436 765 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 ANAPC4Q9UJX5 808 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 ERCC5P28715 1186 aaPredicted RBP21.37■■□□□ 1.01
CPSF3-201ENST00000238112 KRT2P35908 639 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 CRKLP46109 303 aaKnown RBP21.37■■□□□ 1.01
CPSF3-201ENST00000238112 USP49Q70CQ1 688 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 ADGRA1Q86SQ6 560 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 DHX58Q96C10 678 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 AATFQ9NY61 560 aaKnown RBP eCLIP21.37■■□□□ 1.01
CPSF3-201ENST00000238112 VPS54Q9P1Q0 977 aa21.37■■□□□ 1.01
CPSF3-201ENST00000238112 NIP7Q9Y221 180 aaKnown RBP eCLIP21.37■■□□□ 1.01
CPSF3-201ENST00000238112 ADKP55263 362 aaKnown RBP21.36■■□□□ 1.01
CPSF3-201ENST00000238112 FAM177A1Q8N128 213 aaPredicted RBP21.36■■□□□ 1.01
CPSF3-201ENST00000238112 TC2NQ8N9U0 490 aa21.36■■□□□ 1.01
CPSF3-201ENST00000238112 SPATA20Q8TB22 786 aa21.36■■□□□ 1.01
CPSF3-201ENST00000238112 GNL3LQ9NVN8 582 aaKnown RBP21.36■■□□□ 1.01
CPSF3-201ENST00000238112 ZNF446Q9NWS9 450 aa21.36■■□□□ 1.01
CPSF3-201ENST00000238112 FAM53CQ9NYF3 392 aa21.36■■□□□ 1.01
CPSF3-201ENST00000238112 CATIPQ7Z7H3 387 aa21.35■■□□□ 1.01
CPSF3-201ENST00000238112 ZSCAN10Q96SZ4 725 aaPredicted RBP21.35■■□□□ 1.01
CPSF3-201ENST00000238112 SAMSN1Q9NSI8 373 aaKnown RBP21.35■■□□□ 1.01
CPSF3-201ENST00000238112 ARGLU1Q9NWB6 273 aaPredicted RBP21.35■■□□□ 1.01
CPSF3-201ENST00000238112 CAMTA2O94983 1202 aa21.35■■□□□ 1.01
CPSF3-201ENST00000238112 NTSR2O95665 410 aa21.35■■□□□ 1.01
CPSF3-201ENST00000238112 ATP6V1AP38606 617 aa21.35■■□□□ 1.01
CPSF3-201ENST00000238112 BMS1Q14692 1282 aaKnown RBP21.35■■□□□ 1.01
CPSF3-201ENST00000238112 ZNF771Q7L3S4 317 aaPredicted RBP21.35■■□□□ 1.01
CPSF3-201ENST00000238112 PLCH1Q4KWH8 1693 aa21.35■■□□□ 1.01
CPSF3-201ENST00000238112 NHSL1Q5SYE7 1610 aa21.35■■□□□ 1.01
CPSF3-201ENST00000238112 IFIT1BQ5T764 474 aaKnown RBP21.34■■□□□ 1.01
CPSF3-201ENST00000238112 ENAHQ8N8S7 591 aaPredicted RBP21.34■■□□□ 1.01
CPSF3-201ENST00000238112 CDC5LQ99459 802 aaKnown RBP21.34■■□□□ 1.01
CPSF3-201ENST00000238112 PHF20Q9BVI0 1012 aa21.34■■□□□ 1.01
CPSF3-201ENST00000238112 BRMS1Q9HCU9 246 aa21.34■■□□□ 1.01
CPSF3-201ENST00000238112 PARP3Q9Y6F1 533 aa21.34■■□□□ 1.01
CPSF3-201ENST00000238112 FAM205CA6NFA0 338 aa21.34■■□□□ 1.01
CPSF3-201ENST00000238112 CASQ1P31415 396 aa21.34■■□□□ 1.01
CPSF3-201ENST00000238112 CLCN6P51797 869 aa21.34■■□□□ 1.01
CPSF3-201ENST00000238112 CT47A1Q5JQC4 288 aaPredicted RBP21.34■■□□□ 1.01
CPSF3-201ENST00000238112 FANCGO15287 622 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 PRPF3O43395 683 aaKnown RBP21.33■■□□□ 1.01
CPSF3-201ENST00000238112 BMP15O95972 392 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 AFMP43652 599 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 GNG11P61952 73 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 PKN1Q16512 942 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 TOGARAM2Q6ZUX3 1019 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 IQCA1Q86XH1 822 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 MED15Q96RN5 788 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 CARD6Q9BX69 1037 aa21.33■■□□□ 1.01
CPSF3-201ENST00000238112 RBM28Q9NW13 759 aaKnown RBP21.33■■□□□ 1.01
CPSF3-201ENST00000238112 EFCAB8A8MWE9 144 aa21.33■■□□□ 1
CPSF3-201ENST00000238112 SLFN14P0C7P3 912 aa21.33■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms