RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 C19orf44Q9H6X5 657 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 SAR1BQ9Y6B6 198 aa16.5■□□□□ 0.23
PTPRA-201ENST00000216877 A0A1W2PQ27 194 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 A0A1W2PQ64 194 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 A0A1W2PQD8 194 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 CDC25AP30304 524 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 SPDYE1Q8NFV5 336 aaPredicted RBP16.49■□□□□ 0.23
PTPRA-201ENST00000216877 GPHNQ9NQX3 736 aaPredicted RBP16.49■□□□□ 0.23
PTPRA-201ENST00000216877 IPO7O95373 1038 aaKnown RBP16.49■□□□□ 0.23
PTPRA-201ENST00000216877 CDC27P30260 824 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 HAND2P61296 217 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 CCDC122Q5T0U0 273 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 IFT81Q8WYA0 676 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 HSD3B7Q9H2F3 369 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 CLTAP09496 248 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 TCP11Q8WWU5 503 aa16.49■□□□□ 0.23
PTPRA-201ENST00000216877 TTF2Q9UNY4 1162 aaKnown RBP16.49■□□□□ 0.23
PTPRA-201ENST00000216877 PEAK1Q9H792 1746 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 MACROD2A1Z1Q3 448 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 N4BP3O15049 544 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 ZNF185O15231 689 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 KRT14P02533 472 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 CYP21A2P08686 494 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 NNTQ13423 1086 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 PPP1R7Q15435 360 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 DDX46Q7L014 1031 aaKnown RBP16.48■□□□□ 0.23
PTPRA-201ENST00000216877 NUTM2AQ8IVF1 878 aaPredicted RBP16.48■□□□□ 0.23
PTPRA-201ENST00000216877 NWD1Q149M9 1564 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 UPP2O95045 317 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 HDLBPQ00341 1268 aaKnown RBP16.48■□□□□ 0.23
PTPRA-201ENST00000216877 VPS16Q9H269 839 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 AFMP43652 599 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 FMR1Q06787 632 aaKnown RBP eCLIP16.48■□□□□ 0.232e-6■■■■□ 22.7
PTPRA-201ENST00000216877 USHBP1Q8N6Y0 703 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 NUCKS1Q9H1E3 243 aaKnown RBP16.48■□□□□ 0.23
PTPRA-201ENST00000216877 VIPAS39Q9H9C1 493 aa16.48■□□□□ 0.23
PTPRA-201ENST00000216877 OPLAHO14841 1288 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 CTDNEP1O95476 244 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 EIF4A2Q14240 407 aaKnown RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 HIBCHQ6NVY1 386 aaPredicted RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 CYB5D1Q6P9G0 228 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 EAF2Q96CJ1 260 aaPredicted RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 ANKRD18BA2A2Z9 1011 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 WASLO00401 505 aaPredicted RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 TAF5LO75529 589 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 TUBB2AQ13885 445 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 THEMIS2Q5TEJ8 643 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 NAA35Q5VZE5 725 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 AMOTL1Q8IY63 956 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 ZNF483Q8TF39 744 aaPredicted RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 PCMTD1Q96MG8 357 aaPredicted RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 TUBB2BQ9BVA1 445 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 ETAA1Q9NY74 926 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 CMA1P23946 247 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 GNPTABQ3T906 1256 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 ATL3Q6DD88 541 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 DHX32Q7L7V1 743 aaKnown RBP16.47■□□□□ 0.23
PTPRA-201ENST00000216877 ARHGEF25Q86VW2 580 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 FAM167BQ9BTA0 163 aa16.47■□□□□ 0.23
PTPRA-201ENST00000216877 CEP170BQ9Y4F5 1589 aaPredicted RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 RXRAP19793 462 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 AARSP49588 968 aaKnown RBP eCLIP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ZC3H6P61129 1189 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 DDR1Q08345 913 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 AIMP1Q12904 312 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ILDR1Q86SU0 546 aaPredicted RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ANKLE2Q86XL3 938 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ZNF513Q8N8E2 541 aaPredicted RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 KCNH3Q9ULD8 1083 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 TPX2Q9ULW0 747 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 PTPRUQ92729 1446 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 GOLGA8KD6RF30 607 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ATP1A1P05023 1023 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 FNTAP49354 379 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 GUCY2FP51841 1108 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 SMTNP53814 917 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ACCSLQ4AC99 568 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 CFAP58Q5T655 872 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 JAKMIP2Q96AA8 810 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 GOLGA8BA8MQT2 603 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 AGPSO00116 658 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 KRT9P35527 623 aa16.46■□□□□ 0.23
PTPRA-201ENST00000216877 MTHFSDQ2M296 383 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 CAPRIN2Q6IMN6 1127 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 ZNF473Q8WTR7 871 aaKnown RBP16.46■□□□□ 0.23
PTPRA-201ENST00000216877 FSBPO95073 299 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 PPARAQ07869 468 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 NSMCE1Q8WV22 266 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 KCNB2Q92953 911 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 PNPLA6Q8IY17 1366 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 IDEP14735 1019 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 EZH2Q15910 746 aaKnown RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 MEX3CQ5U5Q3 659 aaKnown RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 CCT8L2Q96SF2 557 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 LLPHQ9BRT6 129 aaKnown RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 TEX13AQ9BXU3 409 aaPredicted RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 PHRF1Q9P1Y6 1649 aaKnown RBP16.45■□□□□ 0.22
PTPRA-201ENST00000216877 YEATS4O95619 227 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 LSP1P33241 339 aa16.45■□□□□ 0.22
PTPRA-201ENST00000216877 WDR93Q6P2C0 686 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms