RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 GADL1Q6ZQY3 521 aa17.05■□□□□ 0.32
LINC00339-211ENST00000641009 ZNF333Q96JL9 665 aa17.05■□□□□ 0.32
LINC00339-211ENST00000641009 PARK7Q99497 189 aaKnown RBP17.05■□□□□ 0.32
LINC00339-211ENST00000641009 PIH1D3Q9NQM4 214 aaKnown RBP17.05■□□□□ 0.32
LINC00339-211ENST00000641009 FASTKD5Q7L8L6 764 aaKnown RBP17.04■□□□□ 0.32
LINC00339-211ENST00000641009 TRIM47Q96LD4 638 aa17.04■□□□□ 0.32
LINC00339-211ENST00000641009 NDUFB9Q9Y6M9 179 aa17.04■□□□□ 0.32
LINC00339-211ENST00000641009 BAG3O95817 575 aa17.03■□□□□ 0.32
LINC00339-211ENST00000641009 PSMC4P43686 418 aa17.03■□□□□ 0.32
LINC00339-211ENST00000641009 NBPF11Q86T75 865 aa17.03■□□□□ 0.32
LINC00339-211ENST00000641009 SH3TC2Q8TF17 1288 aa17.03■□□□□ 0.32
LINC00339-211ENST00000641009 TGFBRAP1Q8WUH2 860 aa17.03■□□□□ 0.32
LINC00339-211ENST00000641009 MYCP01106 439 aaPredicted RBP17.02■□□□□ 0.32
LINC00339-211ENST00000641009 GNRH1P01148 92 aa17.02■□□□□ 0.32
LINC00339-211ENST00000641009 PLCG2P16885 1265 aa17.02■□□□□ 0.32
LINC00339-211ENST00000641009 EN2P19622 333 aaPredicted RBP17.02■□□□□ 0.32
LINC00339-211ENST00000641009 PPP4CP60510 307 aa17.02■□□□□ 0.32
LINC00339-211ENST00000641009 RRP1BQ14684 758 aaKnown RBP17.02■□□□□ 0.32
LINC00339-211ENST00000641009 MAPKAPK5Q8IW41 473 aa17.02■□□□□ 0.32
LINC00339-211ENST00000641009 IDH1O75874 414 aaKnown RBP17.01■□□□□ 0.31
LINC00339-211ENST00000641009 FMNL1O95466 1100 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-211ENST00000641009 BCRP11274 1271 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 AACSQ86V21 672 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 ERC1Q8IUD2 1116 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 IL1RAPL2Q9NP60 686 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 PI4KBQ9UBF8 816 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 COG6Q9Y2V7 657 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 FLT1P17948 1338 aa17.01■□□□□ 0.31
LINC00339-211ENST00000641009 MS4A1P11836 297 aa17■□□□□ 0.31
LINC00339-211ENST00000641009 OSBPP22059 807 aa17■□□□□ 0.31
LINC00339-211ENST00000641009 CAP2P40123 477 aa17■□□□□ 0.31
LINC00339-211ENST00000641009 DYNLL1P63167 89 aaKnown RBP17■□□□□ 0.31
LINC00339-211ENST00000641009 TMEM106CQ9BVX2 250 aa17■□□□□ 0.31
LINC00339-211ENST00000641009 HERC5Q9UII4 1024 aaKnown RBP17■□□□□ 0.31
LINC00339-211ENST00000641009 NAV1Q8NEY1 1877 aa17■□□□□ 0.31
LINC00339-211ENST00000641009 APBB1O00213 710 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 CYP7A1P22680 504 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 PRMT2P55345 433 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 SPP2Q13103 211 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 TREML2Q5T2D2 321 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 PRPF38BQ5VTL8 546 aaKnown RBP16.99■□□□□ 0.31
LINC00339-211ENST00000641009 DHX36Q9H2U1 1008 aaKnown RBP16.99■□□□□ 0.31
LINC00339-211ENST00000641009 ANTXR1Q9H6X2 564 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 SRRDQ9UH36 339 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 PALD1Q9ULE6 856 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 AGTPBP1Q9UPW5 1226 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 SLC45A1Q9Y2W3 748 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 MYH7P12883 1935 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 SLC4A8Q2Y0W8 1093 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 SIRT2Q8IXJ6 389 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 MAGEB6Q8N7X4 407 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 MIGA1Q8NAN2 632 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 ZNF280CQ8ND82 737 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 RHPN1Q8TCX5 695 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 DNAJC18Q9H819 358 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 ZBTB40Q9NUA8 1239 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 SAP30BPQ9UHR5 308 aaKnown RBP16.99■□□□□ 0.31
LINC00339-211ENST00000641009 DDX19BQ9UMR2 479 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 MYPNQ86TC9 1320 aa16.99■□□□□ 0.31
LINC00339-211ENST00000641009 DDX60LQ5H9U9 1706 aaKnown RBP16.98■□□□□ 0.31
LINC00339-211ENST00000641009 IGSF3O75054 1194 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 HOXD10P28358 340 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 HSP90AB4PQ58FF6 505 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 RAET1EQ8TD07 263 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 SMCR8Q8TEV9 937 aaPredicted RBP16.98■□□□□ 0.31
LINC00339-211ENST00000641009 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 RCAN3Q9UKA8 241 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 MYH8P13535 1937 aa16.98■□□□□ 0.31
LINC00339-211ENST00000641009 CEP290O15078 2479 aa16.97■□□□□ 0.31
LINC00339-211ENST00000641009 USP17L5A8MUK1 530 aa16.97■□□□□ 0.31
LINC00339-211ENST00000641009 HMGCS2P54868 508 aa16.97■□□□□ 0.31
LINC00339-211ENST00000641009 FCGRTP55899 365 aa16.97■□□□□ 0.31
LINC00339-211ENST00000641009 JAG1P78504 1218 aa16.97■□□□□ 0.31
LINC00339-211ENST00000641009 PRKCZQ05513 592 aa16.97■□□□□ 0.31
LINC00339-211ENST00000641009 SHROOM1Q2M3G4 852 aaPredicted RBP16.97■□□□□ 0.31
LINC00339-211ENST00000641009 CRACR2BQ8N4Y2 399 aaPredicted RBP16.97■□□□□ 0.31
LINC00339-211ENST00000641009 PROCA1Q8NCQ7 364 aaPredicted RBP16.97■□□□□ 0.31
LINC00339-211ENST00000641009 METTL16Q86W50 562 aaKnown RBP16.96■□□□□ 0.31
LINC00339-211ENST00000641009 RPAP2Q8IXW5 612 aaPredicted RBP16.96■□□□□ 0.31
LINC00339-211ENST00000641009 TBC1D2Q9BYX2 928 aa16.96■□□□□ 0.31
LINC00339-211ENST00000641009 GABRQQ9UN88 632 aa16.96■□□□□ 0.31
LINC00339-211ENST00000641009 GDF11O95390 407 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 GRK4P32298 578 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 MAP3K12Q12852 859 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 MTFR1Q15390 333 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 FOXP4Q8IVH2 680 aaPredicted RBP16.95■□□□□ 0.3
LINC00339-211ENST00000641009 CLASRPQ8N2M8 674 aaKnown RBP16.95■□□□□ 0.3
LINC00339-211ENST00000641009 ANKRD13CQ8N6S4 541 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 KIF1BPQ96EK5 621 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 TRIM34Q9BYJ4 488 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 PNMA3Q9UL41 463 aa16.95■□□□□ 0.3
LINC00339-211ENST00000641009 BAZ2AQ9UIF9 1905 aaKnown RBP16.95■□□□□ 0.3
LINC00339-211ENST00000641009 HMMRO75330 724 aa16.94■□□□□ 0.3
LINC00339-211ENST00000641009 ASNSP08243 561 aa16.94■□□□□ 0.3
LINC00339-211ENST00000641009 USP5P45974 858 aa16.94■□□□□ 0.3
LINC00339-211ENST00000641009 AS3MTQ9HBK9 375 aa16.94■□□□□ 0.3
LINC00339-211ENST00000641009 PLXNB2O15031 1838 aa16.94■□□□□ 0.3
LINC00339-211ENST00000641009 SLC34A2O95436 690 aa16.93■□□□□ 0.3
LINC00339-211ENST00000641009 HLA-DOAP06340 250 aa16.93■□□□□ 0.3
LINC00339-211ENST00000641009 MTMR2Q13614 643 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms