RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 MYPNQ86TC9 1320 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 OSBPP22059 807 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 ZAP70P43403 619 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 ERO1BQ86YB8 467 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 CLASRPQ8N2M8 674 aaKnown RBP14.2□□□□□ -0.14
CLN3-257ENST00000637110 SLAIN1Q8ND83 568 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 RHPN1Q8TCX5 695 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 ZKSCAN4Q969J2 545 aaPredicted RBP14.2□□□□□ -0.14
CLN3-257ENST00000637110 NSUN4Q96CB9 384 aaKnown RBP14.2□□□□□ -0.14
CLN3-257ENST00000637110 FAM163AQ96GL9 167 aaPredicted RBP14.2□□□□□ -0.14
CLN3-257ENST00000637110 FAM198AQ9UFP1 575 aa14.2□□□□□ -0.14
CLN3-257ENST00000637110 GPR75-ASB3A0A0A6YYF3 556 aa14.19□□□□□ -0.14
CLN3-257ENST00000637110 ENTPD3O75355 529 aa14.19□□□□□ -0.14
CLN3-257ENST00000637110 ECM2O94769 699 aaPredicted RBP14.19□□□□□ -0.14
CLN3-257ENST00000637110 IFIT2P09913 472 aaKnown RBP14.19□□□□□ -0.14
CLN3-257ENST00000637110 NAA16Q6N069 864 aaPredicted RBP14.19□□□□□ -0.14
CLN3-257ENST00000637110 C17orf99Q6UX52 265 aa14.19□□□□□ -0.14
CLN3-257ENST00000637110 ZFPM1Q8IX07 1006 aa14.19□□□□□ -0.14
CLN3-257ENST00000637110 KIF1BPQ96EK5 621 aa14.19□□□□□ -0.14
CLN3-257ENST00000637110 COL25A1Q9BXS0 654 aaPredicted RBP14.19□□□□□ -0.14
CLN3-257ENST00000637110 RPAP1Q9BWH6 1393 aaPredicted RBP14.19□□□□□ -0.14
CLN3-257ENST00000637110 UNC80Q8N2C7 3258 aa14.19□□□□□ -0.14
CLN3-257ENST00000637110 SGPL1O95470 568 aa14.18□□□□□ -0.14
CLN3-257ENST00000637110 BAG3O95817 575 aa14.18□□□□□ -0.14
CLN3-257ENST00000637110 BMP8BP34820 402 aa14.18□□□□□ -0.14
CLN3-257ENST00000637110 ZNF512BQ96KM6 892 aaPredicted RBP14.18□□□□□ -0.14
CLN3-257ENST00000637110 IDI2Q9BXS1 227 aa14.18□□□□□ -0.14
CLN3-257ENST00000637110 CPA4Q9UI42 421 aa14.18□□□□□ -0.14
CLN3-257ENST00000637110 IRF6O14896 467 aa14.17□□□□□ -0.14
CLN3-257ENST00000637110 RAB11FIP3O75154 756 aa14.17□□□□□ -0.14
CLN3-257ENST00000637110 IDH1O75874 414 aaKnown RBP14.17□□□□□ -0.14
CLN3-257ENST00000637110 CYP2E1P05181 493 aaPredicted RBP14.17□□□□□ -0.14
CLN3-257ENST00000637110 INPP5BP32019 993 aa14.17□□□□□ -0.14
CLN3-257ENST00000637110 PPIL2Q13356 520 aa14.17□□□□□ -0.14
CLN3-257ENST00000637110 SIRT2Q8IXJ6 389 aa14.17□□□□□ -0.14
CLN3-257ENST00000637110 TEX11Q8IYF3 940 aa14.17□□□□□ -0.14
CLN3-257ENST00000637110 PIH1D3Q9NQM4 214 aaKnown RBP14.17□□□□□ -0.14
CLN3-257ENST00000637110 AATFQ9NY61 560 aaKnown RBP eCLIP14.17□□□□□ -0.14
CLN3-257ENST00000637110 TFRCP02786 760 aaKnown RBP14.16□□□□□ -0.14
CLN3-257ENST00000637110 CTGFP29279 349 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 FCGRTP55899 365 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 LRIT3Q3SXY7 679 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 ANKRD23Q86SG2 305 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 ZNF384Q8TF68 577 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 UNC93B1Q9H1C4 597 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 DDX4Q9NQI0 724 aaKnown RBP14.16□□□□□ -0.14
CLN3-257ENST00000637110 MTMR10Q9NXD2 777 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 SNCAIPQ9Y6H5 919 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 NDUFB9Q9Y6M9 179 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 MGAMO43451 1857 aa14.16□□□□□ -0.14
CLN3-257ENST00000637110 DDTLA6NHG4 134 aaPredicted RBP14.15□□□□□ -0.14
CLN3-257ENST00000637110 MAP4K4O95819 1239 aaPredicted RBP14.15□□□□□ -0.14
CLN3-257ENST00000637110 PLCG2P16885 1265 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 CYP7A1P22680 504 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 RHBDL3P58872 404 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 PRKCZQ05513 592 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 Q7L0L9 218 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLN3-257ENST00000637110 SH3RF3Q8TEJ3 882 aaPredicted RBP14.15□□□□□ -0.14
CLN3-257ENST00000637110 GDF15Q99988 308 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 PICK1Q9NRD5 415 aa14.15□□□□□ -0.14
CLN3-257ENST00000637110 PDHXO00330 501 aa14.14□□□□□ -0.15
CLN3-257ENST00000637110 PPATQ06203 517 aa14.14□□□□□ -0.15
CLN3-257ENST00000637110 MAP3K12Q12852 859 aa14.14□□□□□ -0.15
CLN3-257ENST00000637110 SH3BP5LQ7L8J4 393 aa14.14□□□□□ -0.15
CLN3-257ENST00000637110 DNAJC2Q99543 621 aaKnown RBP14.14□□□□□ -0.15
CLN3-257ENST00000637110 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.14□□□□□ -0.15
CLN3-257ENST00000637110 ADGRA2Q96PE1 1338 aa14.14□□□□□ -0.15
CLN3-257ENST00000637110 ALPK3Q96L96 1907 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 TTF1Q15361 905 aaPredicted RBP14.13□□□□□ -0.15
CLN3-257ENST00000637110 NECAB2Q7Z6G3 386 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 MAPKAPK5Q8IW41 473 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 MAGEB6Q8N7X4 407 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 TGFBRAP1Q8WUH2 860 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 PARK7Q99497 189 aaKnown RBP14.13□□□□□ -0.15
CLN3-257ENST00000637110 LRRCC1Q9C099 1032 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 ANTXR1Q9H6X2 564 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 ZNF112Q9UJU3 913 aa14.13□□□□□ -0.15
CLN3-257ENST00000637110 ADCY3O60266 1144 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 IGSF3O75054 1194 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 RRP1P56182 461 aaKnown RBP14.12□□□□□ -0.15
CLN3-257ENST00000637110 ADGRA1Q86SQ6 560 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 TDHQ8IZJ6 230 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 PXYLP1Q8TE99 480 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 DEFB118Q96PH6 123 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 TRIM34Q9BYJ4 488 aa14.12□□□□□ -0.15
CLN3-257ENST00000637110 OSBPL5Q9H0X9 879 aaPredicted RBP14.12□□□□□ -0.15
CLN3-257ENST00000637110 RFX7Q2KHR2 1363 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 FAM196BA6NMK8 535 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 GOLIM4O00461 696 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 SMARCA5O60264 1052 aaPredicted RBP14.11□□□□□ -0.15
CLN3-257ENST00000637110 NPM3O75607 178 aaKnown RBP14.11□□□□□ -0.15
CLN3-257ENST00000637110 INHAP05111 366 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 SLURP2P0DP57 97 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 USP5P45974 858 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 PPP4CP60510 307 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 DYNLL1P63167 89 aaKnown RBP14.11□□□□□ -0.15
CLN3-257ENST00000637110 NOL9Q5SY16 702 aaKnown RBP14.11□□□□□ -0.15
CLN3-257ENST00000637110 C7orf61Q8IZ16 206 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 SCYL3Q8IZE3 742 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms