RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 RUFY1Q96T51 708 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 USP44Q9H0E7 712 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 MIS18AQ9NYP9 233 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 LAMB4A4D0S4 1761 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 AFDNP55196 1824 aaKnown RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 RTN3O95197 1032 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 SLC4A2P04920 1241 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 AARSP49588 968 aaKnown RBP eCLIP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 IFFO1Q0D2I5 559 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 SF3B2Q13435 895 aaKnown RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 ZRSR2Q15696 482 aaKnown RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 SSH3Q8TE77 659 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 VCPKMTQ9H867 229 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 RMI1Q9H9A7 625 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 ECM29Q5VYK3 1845 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 MAP3K5Q99683 1374 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 IFIT2P09913 472 aaKnown RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 SETDB1Q15047 1291 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 LRRC23Q53EV4 343 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 SPATA21Q7Z572 469 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 MYLK4Q86YV6 388 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 CCAR1Q8IX12 1150 aaKnown RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 CCDC47Q96A33 483 aaKnown RBP7.73□□□□□ -1.17
SCN1A-213ENST00000636759 SPAG5Q96R06 1193 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 RIPOR2Q9Y4F9 1068 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 PXDNQ92626 1479 aa7.73□□□□□ -1.17
SCN1A-213ENST00000636759 PRPF6O94906 941 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 PDHBP11177 359 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CCT4P50991 539 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CDCA2Q69YH5 1023 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 MFN1Q8IWA4 741 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 KCNH5Q8NCM2 988 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 IL17REQ8NFR9 667 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 XAGE2Q96GT9 111 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 RGL1Q9NZL6 768 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 PKD1L3Q7Z443 1732 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 NWD2Q9ULI1 1742 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 UBR2Q8IWV8 1755 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 A0A087WWV3 80 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 H3BQV1 296 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 FANCGO15287 622 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 AHCYL1O43865 530 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 ZNF202O95125 648 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 SYF2O95926 243 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 IMPDH2P12268 514 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 UBASH3AP57075 661 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CEBPZQ03701 1054 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 IFFO2Q5TF58 517 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CCDC13Q8IYE1 715 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 TRIM58Q8NG06 486 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 LSG1Q9H089 658 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 ACTR5Q9H9F9 607 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 PARP4Q9UKK3 1724 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 GNAT3A8MTJ3 354 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 POLD1P28340 1107 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 LMOD1P29536 600 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 FANCCQ00597 558 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 COL9A3Q14050 684 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 SLMAPQ14BN4 828 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 ESCO1Q5FWF5 840 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 RRP12Q5JTH9 1297 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CC2D2BQ6DHV5 1058 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CYB5D1Q6P9G0 228 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 OR8K1Q8NGG5 319 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 MAGEC3Q8TD91 643 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 RIN2Q8WYP3 895 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 RBM33Q96EV2 1170 aaKnown RBP7.72□□□□□ -1.17
SCN1A-213ENST00000636759 SNRKQ9NRH2 765 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 ZNF232Q9UNY5 417 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CYP46A1Q9Y6A2 500 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 ADCY9O60503 1353 aa7.72□□□□□ -1.17
SCN1A-213ENST00000636759 CTAGE9A4FU28 777 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 GOLGA6BA6NDN3 693 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 ZEB2O60315 1214 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 RASSF9O75901 435 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 TPP2P29144 1249 aaPredicted RBP7.71□□□□□ -1.17
SCN1A-213ENST00000636759 PAPPAQ13219 1627 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 NUTM2GQ5VZR2 741 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 PRPF40BQ6NWY9 871 aaKnown RBP7.71□□□□□ -1.17
SCN1A-213ENST00000636759 ARHGEF25Q86VW2 580 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 NECAB1Q8N987 351 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 ACRBPQ8NEB7 543 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 PGBD1Q96JS3 809 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 ORAI2Q96SN7 254 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 TSC22D3Q99576 134 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 TRIM4Q9C037 500 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 EHD4Q9H223 541 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 SNX14Q9Y5W7 946 aa7.71□□□□□ -1.17
SCN1A-213ENST00000636759 MAP4K4O95819 1239 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-213ENST00000636759 GGCXP38435 758 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 PAPOLAP51003 745 aaKnown RBP7.71□□□□□ -1.18
SCN1A-213ENST00000636759 BRAPQ7Z569 592 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 NCAPG2Q86XI2 1143 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 JAKMIP1Q96N16 626 aaKnown RBP7.71□□□□□ -1.18
SCN1A-213ENST00000636759 TSGA10Q9BZW7 698 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 BIN2Q9UBW5 565 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-213ENST00000636759 OPA1O60313 960 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 LARGE1O95461 756 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 CCDC175P0C221 793 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms