RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LDHBP07195 334 aaKnown RBP18.27■□□□□ 0.52
CLN3-249ENST00000636685 HMGCS2P54868 508 aa18.27■□□□□ 0.52
CLN3-249ENST00000636685 PUM3Q15397 648 aaKnown RBP18.27■□□□□ 0.52
CLN3-249ENST00000636685 C9orf50Q5SZB4 431 aa18.27■□□□□ 0.52
CLN3-249ENST00000636685 NUDT12Q9BQG2 462 aa18.27■□□□□ 0.52
CLN3-249ENST00000636685 SENP6Q9GZR1 1112 aaPredicted RBP18.27■□□□□ 0.52
CLN3-249ENST00000636685 BICC1Q9H694 974 aaKnown RBP18.27■□□□□ 0.52
CLN3-249ENST00000636685 RFX7Q2KHR2 1363 aa18.27■□□□□ 0.51
CLN3-249ENST00000636685 ALDH1L1O75891 902 aa18.26■□□□□ 0.51
CLN3-249ENST00000636685 NBPF7P0C2Y1 421 aaPredicted RBP18.26■□□□□ 0.51
CLN3-249ENST00000636685 XRCC5P13010 732 aaKnown RBP18.26■□□□□ 0.51
CLN3-249ENST00000636685 ZKSCAN1P17029 563 aaPredicted RBP18.26■□□□□ 0.51
CLN3-249ENST00000636685 ATN1P54259 1190 aaPredicted RBP18.26■□□□□ 0.51
CLN3-249ENST00000636685 CCL14Q16627 93 aa18.26■□□□□ 0.51
CLN3-249ENST00000636685 SLC4A10Q6U841 1118 aa18.26■□□□□ 0.51
CLN3-249ENST00000636685 DDX4Q9NQI0 724 aaKnown RBP18.26■□□□□ 0.51
CLN3-249ENST00000636685 MORF4L1Q9UBU8 362 aa18.26■□□□□ 0.51
CLN3-249ENST00000636685 FAM196BA6NMK8 535 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 PLA2G5P39877 138 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 PABPC4Q13310 644 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLN3-249ENST00000636685 TJAP1Q5JTD0 557 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 WWC1Q8IX03 1113 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 ANKRD44Q8N8A2 993 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 SRCIN1Q9C0H9 1055 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 NCOR1O75376 2440 aa18.25■□□□□ 0.51
CLN3-249ENST00000636685 DDX10Q13206 875 aaKnown RBP18.24■□□□□ 0.51
CLN3-249ENST00000636685 PICALMQ13492 652 aa18.24■□□□□ 0.51
CLN3-249ENST00000636685 RABL6Q3YEC7 729 aaPredicted RBP18.24■□□□□ 0.51
CLN3-249ENST00000636685 USP38Q8NB14 1042 aa18.24■□□□□ 0.51
CLN3-249ENST00000636685 ZNF280CQ8ND82 737 aa18.24■□□□□ 0.51
CLN3-249ENST00000636685 PRKAG2Q9UGJ0 569 aa18.24■□□□□ 0.51
CLN3-249ENST00000636685 FANCIQ9NVI1 1328 aa18.23■□□□□ 0.51
CLN3-249ENST00000636685 SLC5A1P13866 664 aa18.23■□□□□ 0.51
CLN3-249ENST00000636685 TRMT44Q8IYL2 757 aaKnown RBP18.23■□□□□ 0.51
CLN3-249ENST00000636685 SOCS4Q8WXH5 440 aa18.23■□□□□ 0.51
CLN3-249ENST00000636685 USP6NLQ92738 828 aa18.23■□□□□ 0.51
CLN3-249ENST00000636685 TXNRD2Q9NNW7 524 aa18.23■□□□□ 0.51
CLN3-249ENST00000636685 RLFQ13129 1914 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 RTP1P59025 263 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 SMAD3P84022 425 aaKnown RBP18.22■□□□□ 0.51
CLN3-249ENST00000636685 PDE3AQ14432 1141 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 CCDC27Q2M243 656 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 FAM122AQ96E09 287 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 P2RX7Q99572 595 aaKnown RBP18.22■□□□□ 0.51
CLN3-249ENST00000636685 GAKO14976 1311 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 IL16Q14005 1332 aa18.22■□□□□ 0.51
CLN3-249ENST00000636685 TMEM265A0A087WTH1 108 aa18.21■□□□□ 0.51
CLN3-249ENST00000636685 EXOSC9Q06265 439 aaKnown RBP18.21■□□□□ 0.51
CLN3-249ENST00000636685 LPIN2Q92539 896 aa18.21■□□□□ 0.51
CLN3-249ENST00000636685 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLN3-249ENST00000636685 UTYO14607 1347 aa18.21■□□□□ 0.51
CLN3-249ENST00000636685 TBC1D12O60347 775 aa18.2■□□□□ 0.5
CLN3-249ENST00000636685 RGS2P41220 211 aa18.2■□□□□ 0.5
CLN3-249ENST00000636685 IRX3P78415 501 aaPredicted RBP18.2■□□□□ 0.5
CLN3-249ENST00000636685 RRP1BQ14684 758 aaKnown RBP18.2■□□□□ 0.5
CLN3-249ENST00000636685 SH3D19Q5HYK7 790 aa18.2■□□□□ 0.5
CLN3-249ENST00000636685 GPRC5AQ8NFJ5 357 aa18.2■□□□□ 0.5
CLN3-249ENST00000636685 OSBPL5Q9H0X9 879 aaPredicted RBP18.2■□□□□ 0.5
CLN3-249ENST00000636685 ATP11BQ9Y2G3 1177 aa18.2■□□□□ 0.5
CLN3-249ENST00000636685 SALL1Q9NSC2 1324 aa18.2■□□□□ 0.5
CLN3-249ENST00000636685 MYO9BQ13459 2157 aa18.19■□□□□ 0.5
CLN3-249ENST00000636685 Q3C1V9 767 aa18.19■□□□□ 0.5
CLN3-249ENST00000636685 MORN1Q5T089 497 aa18.19■□□□□ 0.5
CLN3-249ENST00000636685 BADQ92934 168 aa18.19■□□□□ 0.5
CLN3-249ENST00000636685 PORCNQ9H237 461 aa18.19■□□□□ 0.5
CLN3-249ENST00000636685 USP17L5A8MUK1 530 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 MAPK4P31152 587 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 HERVK_113P62684 666 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 GPR142Q7Z601 462 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 APBA2Q99767 749 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 TBC1D2Q9BYX2 928 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 PRDM5Q9NQX1 630 aaPredicted RBP18.18■□□□□ 0.5
CLN3-249ENST00000636685 RBPJLQ9UBG7 517 aa18.18■□□□□ 0.5
CLN3-249ENST00000636685 EYA2O00167 538 aa18.17■□□□□ 0.5
CLN3-249ENST00000636685 BTDP43251 543 aa18.17■□□□□ 0.5
CLN3-249ENST00000636685 PLEKHH3Q7Z736 793 aa18.17■□□□□ 0.5
CLN3-249ENST00000636685 GNL3LQ9NVN8 582 aaKnown RBP18.17■□□□□ 0.5
CLN3-249ENST00000636685 FLRT1Q9NZU1 646 aa18.17■□□□□ 0.5
CLN3-249ENST00000636685 DENND2AQ9ULE3 1009 aa18.17■□□□□ 0.5
CLN3-249ENST00000636685 HOXA7P31268 230 aaPredicted RBP18.16■□□□□ 0.5
CLN3-249ENST00000636685 CAP2P40123 477 aa18.16■□□□□ 0.5
CLN3-249ENST00000636685 PHKA1P46020 1223 aa18.16■□□□□ 0.5
CLN3-249ENST00000636685 ERVK-9P63128 1117 aa18.16■□□□□ 0.5
CLN3-249ENST00000636685 ERVK-24P63145 666 aa18.16■□□□□ 0.5
CLN3-249ENST00000636685 MTMR2Q13614 643 aa18.16■□□□□ 0.5
CLN3-249ENST00000636685 GRIN2CQ14957 1233 aa18.16■□□□□ 0.5
CLN3-249ENST00000636685 DZIP1Q86YF9 867 aaKnown RBP18.16■□□□□ 0.5
CLN3-249ENST00000636685 CCAR1Q8IX12 1150 aaKnown RBP18.16■□□□□ 0.5
CLN3-249ENST00000636685 PRKRIP1Q9H875 184 aaPredicted RBP18.16■□□□□ 0.5
CLN3-249ENST00000636685 DDX20Q9UHI6 824 aaKnown RBP18.16■□□□□ 0.5
CLN3-249ENST00000636685 DNM1LO00429 736 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 CNGA1P29973 690 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 POTEEQ6S8J3 1075 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 LPAR1Q92633 364 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 PAGR1Q9BTK6 254 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 AS3MTQ9HBK9 375 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 BDP1A6H8Y1 2624 aa18.15■□□□□ 0.5
CLN3-249ENST00000636685 HOXD11P31277 338 aaPredicted RBP18.14■□□□□ 0.49
CLN3-249ENST00000636685 RFX5P48382 616 aaPredicted RBP18.14■□□□□ 0.49
CLN3-249ENST00000636685 BACE1P56817 501 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms