RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SYTL4Q96C24 671 aaPredicted RBP14.68□□□□□ -0.06
LINC00540-203ENST00000631321 ERO1AQ96HE7 468 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 TMX1Q9H3N1 280 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 FBXO2Q9UK22 296 aaPredicted RBP14.68□□□□□ -0.06
LINC00540-203ENST00000631321 PCDHA5Q9Y5H7 936 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 BCL9LQ86UU0 1499 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 BCORQ6W2J9 1755 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 IGHMBP2P38935 993 aaKnown RBP14.68□□□□□ -0.06
LINC00540-203ENST00000631321 NT5DC1Q5TFE4 455 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 ISM2Q6H9L7 571 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 OLFM4Q6UX06 510 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 NOL10Q9BSC4 688 aaKnown RBP14.68□□□□□ -0.06
LINC00540-203ENST00000631321 L2HGDHQ9H9P8 463 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 HOOK1Q9UJC3 728 aaKnown RBP14.68□□□□□ -0.06
LINC00540-203ENST00000631321 ANAPC4Q9UJX5 808 aa14.68□□□□□ -0.06
LINC00540-203ENST00000631321 ZNF215Q9UL58 517 aaPredicted RBP14.68□□□□□ -0.06
LINC00540-203ENST00000631321 NTSR2O95665 410 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 UBASH3AP57075 661 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 NAA30Q147X3 362 aaPredicted RBP14.67□□□□□ -0.06
LINC00540-203ENST00000631321 VSTM4Q8IW00 320 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 RREB1Q92766 1687 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 ERICH2A1L162 156 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 BMP6P22004 513 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 CRKLP46109 303 aaKnown RBP14.67□□□□□ -0.06
LINC00540-203ENST00000631321 PPP2R5BQ15173 497 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 DPF2Q92785 391 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 ZNF804BA4D1E1 1349 aa14.67□□□□□ -0.06
LINC00540-203ENST00000631321 CHD4Q14839 1912 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 CCP110O43303 1012 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 SARSP49591 514 aaKnown RBP14.66□□□□□ -0.06
LINC00540-203ENST00000631321 CBX1P83916 185 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 PPARAQ07869 468 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 ZNF654Q8IZM8 581 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 FANCBQ8NB91 859 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 KCNJ14Q9UNX9 436 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 SLU7O95391 586 aaKnown RBP14.66□□□□□ -0.06
LINC00540-203ENST00000631321 ZSCAN20P17040 1043 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-203ENST00000631321 CHRNDQ07001 517 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 SEC23AQ15436 765 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 RRP12Q5JTH9 1297 aaKnown RBP14.66□□□□□ -0.06
LINC00540-203ENST00000631321 CDCA7Q9BWT1 371 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-203ENST00000631321 OGFRQ9NZT2 677 aa14.66□□□□□ -0.06
LINC00540-203ENST00000631321 SRPRBQ9Y5M8 271 aaKnown RBP14.66□□□□□ -0.06
LINC00540-203ENST00000631321 SERPINC1P01008 464 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 PDE4BQ07343 736 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 POSTNQ15063 836 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 CCDC93Q567U6 631 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 UTP14CQ5TAP6 766 aaKnown RBP14.65□□□□□ -0.06
LINC00540-203ENST00000631321 ZKSCAN3Q9BRR0 538 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 FANCLQ9NW38 375 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 LRP2BPQ9P2M1 347 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 MAN1B1Q9UKM7 699 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 FOXN1O15353 648 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 GRIN1Q05586 938 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 FCHSD1Q86WN1 690 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 TRIML1Q8N9V2 468 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 MLKLQ8NB16 471 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 RNF26Q9BY78 433 aaPredicted RBP14.65□□□□□ -0.06
LINC00540-203ENST00000631321 CEP131Q9UPN4 1083 aa14.65□□□□□ -0.06
LINC00540-203ENST00000631321 WNK3Q9BYP7 1800 aa14.65□□□□□ -0.07
LINC00540-203ENST00000631321 CICQ96RK0 1608 aaPredicted RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 DOT1LQ8TEK3 1739 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 ZNF18P17022 549 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 CYP7A1P22680 504 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 MORC3Q14149 939 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 MIGA1Q8NAN2 632 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 ZNF397Q8NF99 534 aaPredicted RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 SPATA20Q8TB22 786 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 CDC5LQ99459 802 aaKnown RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 TOMM22Q9NS69 142 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 INTS13Q9NVM9 706 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 LAMB2P55268 1798 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 COL16A1Q07092 1604 aaPredicted RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 TBX2Q13207 712 aaPredicted RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 CFAP100Q494V2 611 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 KANK3Q6NY19 840 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 ENOX1Q8TC92 643 aaKnown RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 ESR2Q92731 530 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 UBAC1Q9BSL1 405 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 DACH1Q9UI36 760 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 DDX41Q9UJV9 622 aaKnown RBP14.64□□□□□ -0.07
LINC00540-203ENST00000631321 PRDM4Q9UKN5 801 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 PCDHB6Q9Y5E3 794 aa14.64□□□□□ -0.07
LINC00540-203ENST00000631321 ACTN4O43707 911 aaKnown RBP14.63□□□□□ -0.07
LINC00540-203ENST00000631321 DMTNQ08495 405 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 FUT2Q10981 343 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 NR5A1Q13285 461 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 SPECC1Q5M775 1068 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 ADGRA1Q86SQ6 560 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 TAOK2Q9UL54 1235 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 PHLPP1O60346 1717 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 LOC102724428A0A0B4J2F2 783 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 SPDYE4A6NLX3 237 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 POLR2DO15514 142 aaKnown RBP14.63□□□□□ -0.07
LINC00540-203ENST00000631321 TOP1P11387 765 aaKnown RBP14.63□□□□□ -0.07
LINC00540-203ENST00000631321 ATP6V1AP38606 617 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 SIK1P57059 783 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 SYT10Q6XYQ8 523 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 OXER1Q8TDS5 423 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 RIOK1Q9BRS2 568 aaKnown RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms