RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 APPBP2Q92624 585 aa24.94■■□□□ 1.58
CLN3-240ENST00000631023 TRIM34Q9BYJ4 488 aa24.94■■□□□ 1.58
CLN3-240ENST00000631023 DOCK1Q14185 1865 aa24.94■■□□□ 1.58
CLN3-240ENST00000631023 SIPA1L1O43166 1804 aa24.94■■□□□ 1.58
CLN3-240ENST00000631023 FOXN1O15353 648 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 CTCFP49711 727 aaPredicted RBP24.93■■□□□ 1.58
CLN3-240ENST00000631023 NOL9Q5SY16 702 aaKnown RBP24.93■■□□□ 1.58
CLN3-240ENST00000631023 TTC6Q86TZ1 520 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 CRACR2BQ8N4Y2 399 aaPredicted RBP24.93■■□□□ 1.58
CLN3-240ENST00000631023 OTUD5Q96G74 571 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 ATAD5Q96QE3 1844 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 CTNND1O60716 968 aaKnown RBP24.93■■□□□ 1.58
CLN3-240ENST00000631023 CHGBP05060 677 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 PPATQ06203 517 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 DDRGK1Q96HY6 314 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 PUS7LQ9H0K6 701 aaKnown RBP24.93■■□□□ 1.58
CLN3-240ENST00000631023 OSBPL3Q9H4L5 887 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 PICK1Q9NRD5 415 aa24.93■■□□□ 1.58
CLN3-240ENST00000631023 NEFLP07196 543 aa24.92■■□□□ 1.58
CLN3-240ENST00000631023 GJA5P36382 358 aa24.92■■□□□ 1.58
CLN3-240ENST00000631023 ATP8A2Q9NTI2 1148 aa24.92■■□□□ 1.58
CLN3-240ENST00000631023 SCYL3Q8IZE3 742 aa24.91■■□□□ 1.58
CLN3-240ENST00000631023 SDR42E1Q8WUS8 393 aa24.91■■□□□ 1.58
CLN3-240ENST00000631023 CNKSR2Q8WXI2 1034 aa24.91■■□□□ 1.58
CLN3-240ENST00000631023 FAM196BA6NMK8 535 aa24.9■■□□□ 1.58
CLN3-240ENST00000631023 POLR3DP05423 398 aaPredicted RBP24.9■■□□□ 1.58
CLN3-240ENST00000631023 GTF2A2P52657 109 aa24.9■■□□□ 1.58
CLN3-240ENST00000631023 PPIL2Q13356 520 aa24.9■■□□□ 1.58
CLN3-240ENST00000631023 METTL16Q86W50 562 aaKnown RBP24.9■■□□□ 1.58
CLN3-240ENST00000631023 TICAM2Q86XR7 235 aa24.9■■□□□ 1.58
CLN3-240ENST00000631023 DCP1AQ9NPI6 582 aaPredicted RBP24.9■■□□□ 1.58
CLN3-240ENST00000631023 MCM9Q9NXL9 1143 aa24.9■■□□□ 1.58
CLN3-240ENST00000631023 SAGE1Q9NXZ1 904 aa24.9■■□□□ 1.58
CLN3-240ENST00000631023 TRIM6-TRIM34B2RNG4 842 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 SLURP2P0DP57 97 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 SLC4A8Q2Y0W8 1093 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 OSBP2Q969R2 916 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 RNF186Q9NXI6 227 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 SERPINB13Q9UIV8 391 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 SLC4A4Q9Y6R1 1079 aa24.89■■□□□ 1.58
CLN3-240ENST00000631023 MYH8P13535 1937 aa24.89■■□□□ 1.57
CLN3-240ENST00000631023 DDX60LQ5H9U9 1706 aaKnown RBP24.89■■□□□ 1.57
CLN3-240ENST00000631023 TRPA1O75762 1119 aa24.88■■□□□ 1.57
CLN3-240ENST00000631023 OTUD7BQ6GQQ9 843 aa24.88■■□□□ 1.57
CLN3-240ENST00000631023 STRBPQ96SI9 672 aaKnown RBP24.88■■□□□ 1.57
CLN3-240ENST00000631023 EHD4Q9H223 541 aa24.88■■□□□ 1.57
CLN3-240ENST00000631023 PRKAB2O43741 272 aa24.88■■□□□ 1.57
CLN3-240ENST00000631023 ALDH1A1P00352 501 aa24.88■■□□□ 1.57
CLN3-240ENST00000631023 AMOTL1Q8IY63 956 aa24.88■■□□□ 1.57
CLN3-240ENST00000631023 IRF6O14896 467 aa24.87■■□□□ 1.57
CLN3-240ENST00000631023 GNAT2P19087 354 aa24.87■■□□□ 1.57
CLN3-240ENST00000631023 CAP2P40123 477 aa24.87■■□□□ 1.57
CLN3-240ENST00000631023 SNAPC2Q13487 334 aa24.87■■□□□ 1.57
CLN3-240ENST00000631023 RILPL2Q969X0 211 aa24.87■■□□□ 1.57
CLN3-240ENST00000631023 MS4A4AQ96JQ5 239 aa24.87■■□□□ 1.57
CLN3-240ENST00000631023 PHIPQ8WWQ0 1821 aa24.86■■□□□ 1.57
CLN3-240ENST00000631023 TESPA1A2RU30 521 aaPredicted RBP24.86■■□□□ 1.57
CLN3-240ENST00000631023 CETPP11597 493 aa24.86■■□□□ 1.57
CLN3-240ENST00000631023 IFNL1Q8IU54 200 aa24.86■■□□□ 1.57
CLN3-240ENST00000631023 ZHX2Q9Y6X8 837 aa24.86■■□□□ 1.57
CLN3-240ENST00000631023 CASP8AP2Q9UKL3 1982 aa24.86■■□□□ 1.57
CLN3-240ENST00000631023 GPAA1O43292 621 aa24.85■■□□□ 1.57
CLN3-240ENST00000631023 HSPA8P11142 646 aaKnown RBP24.85■■□□□ 1.57
CLN3-240ENST00000631023 PTPRAP18433 802 aa24.85■■□□□ 1.57
CLN3-240ENST00000631023 PLCD1P51178 756 aa24.85■■□□□ 1.57
CLN3-240ENST00000631023 LBX1P52954 281 aa24.85■■□□□ 1.57
CLN3-240ENST00000631023 ZMYM1Q5SVZ6 1142 aa24.85■■□□□ 1.57
CLN3-240ENST00000631023 CCL15-CCL14A0A0B4J2E2 113 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 CCL15Q16663 113 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 DNAJC18Q9H819 358 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 GINM1Q9NU53 330 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 TSKSQ9UJT2 592 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 TAOK2Q9UL54 1235 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 M0R2C6 588 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 CXCL11O14625 94 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 ASNSP08243 561 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 GIMAP6Q6P9H5 292 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 CENPQQ7L2Z9 268 aaPredicted RBP24.84■■□□□ 1.57
CLN3-240ENST00000631023 TBC1D2Q9BYX2 928 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 PRDM10Q9NQV6 1147 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 KCNH4Q9UQ05 1017 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 PTPRFP10586 1907 aa24.84■■□□□ 1.57
CLN3-240ENST00000631023 PDE4AP27815 886 aa24.83■■□□□ 1.57
CLN3-240ENST00000631023 USP17L12C9JPN9 530 aa24.82■■□□□ 1.56
CLN3-240ENST00000631023 USP17L21D6R901 530 aa24.82■■□□□ 1.56
CLN3-240ENST00000631023 APPP05067 770 aa24.82■■□□□ 1.56
CLN3-240ENST00000631023 BRI3BPQ8WY22 251 aa24.82■■□□□ 1.56
CLN3-240ENST00000631023 SEC62Q99442 399 aaKnown RBP24.82■■□□□ 1.56
CLN3-240ENST00000631023 IGF2BP3O00425 579 aaKnown RBP eCLIP24.81■■□□□ 1.56
CLN3-240ENST00000631023 RRP1BQ14684 758 aaKnown RBP24.81■■□□□ 1.56
CLN3-240ENST00000631023 TATDN1Q6P1N9 297 aa24.81■■□□□ 1.56
CLN3-240ENST00000631023 HELLSQ9NRZ9 838 aa24.81■■□□□ 1.56
CLN3-240ENST00000631023 AFG3L2Q9Y4W6 797 aa24.81■■□□□ 1.56
CLN3-240ENST00000631023 USP17L5A8MUK1 530 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 GSG1L2A8MUP6 293 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 PATL2C9JE40 543 aaKnown RBP24.8■■□□□ 1.56
CLN3-240ENST00000631023 C12orf60Q5U649 245 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 PTPN18Q99952 460 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 NACAP1Q9BZK3 213 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 ARPP21Q9UBL0 812 aaPredicted RBP24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms