RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	PF4	P02776	101 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	FOSL1	P15407	271 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	GART	P22102	1010 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	ADM	P35318	185 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	CD97	P48960	835 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	MPP2	Q14168	576 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	MAP3K11	Q16584	847 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	PPM1J	Q5JR12	505 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	ARTN	Q5T4W7	220 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	HID1	Q8IV36	788 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	OSBPL1A	Q9BXW6	950 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	LRRC3	Q9BY71	257 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	SSU72	Q9NP77	194 aa	Known RBP	5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	GGT7	Q9UJ14	662 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	TLR6	Q9Y2C9	796 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	LEMD3	Q9Y2U8	911 aa		5.2	□□□□□ -1.58
CNOT1-223	ENST00000628857	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	DYNC1LI2	O43237	492 aa	Predicted RBP	5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	ZNF76	P36508	570 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	EIF4A3	P38919	411 aa	Known RBP	5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	SEPT6	Q14141	434 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	WIPI1	Q5MNZ9	446 aa	Predicted RBP	5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	TMEM201	Q5SNT2	666 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	SLC6A19	Q695T7	634 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	FAM196A	Q6ZSG2	479 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	MFSD2A	Q8NA29	543 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	PICK1	Q9NRD5	415 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	KBTBD4	Q9NVX7	518 aa		5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	SUPT16H	Q9Y5B9	1047 aa	Known RBP	5.19	□□□□□ -1.58
CNOT1-223	ENST00000628857	BPNT1	O95861	308 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	RECK	O95980	971 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	FANCC	Q00597	558 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	DTX1	Q86Y01	620 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	MCAT	Q8IVS2	390 aa	Known RBP	5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	MRPL41	Q8IXM3	137 aa	Known RBP	5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	FBXL6	Q8N531	539 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	RNF34	Q969K3	372 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	MRRF	Q96E11	262 aa	Known RBP	5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	COX4I2	Q96KJ9	171 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	DUSP23	Q9BVJ7	150 aa		5.18	□□□□□ -1.58
CNOT1-223	ENST00000628857	MINDY4B	A8MYZ0	360 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	CST3	P01034	146 aa	Predicted RBP	5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	TGFB1	P01137	390 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	PRNP	P04156	253 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	SPINK2	P20155	84 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	ETF1	P62495	437 aa	Known RBP	5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	SLBP	Q14493	270 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	SNAP47	Q5SQN1	464 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	FBXL19	Q6PCT2	694 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	BNC2	Q6ZN30	1099 aa	Predicted RBP	5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	FAM214B	Q7L5A3	538 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	GOLM1	Q8NBJ4	401 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	JARID2	Q92833	1246 aa	Predicted RBP	5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	NT5C1A	Q9BXI3	368 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	FOXQ1	Q9C009	403 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	PRDM10	Q9NQV6	1147 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	CSAD	Q9Y600	493 aa		5.17	□□□□□ -1.58
CNOT1-223	ENST00000628857	FAM170B	A6NMN3	283 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	CYP26A1	O43174	497 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	HYAL3	O43820	417 aa	Predicted RBP	5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	ATE1	O95260	518 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	F13A1	P00488	732 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	GRK4	P32298	578 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	MSMP	Q1L6U9	139 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	CWF19L2	Q2TBE0	894 aa	Known RBP	5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	ZNF746	Q6NUN9	644 aa	Predicted RBP	5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	C22orf34	Q6ZV56	151 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	ZNF765	Q7L2R6	523 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	REC114	Q7Z4M0	266 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	REXO1	Q8N1G1	1221 aa	Known RBP	5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	ZNF296	Q8WUU4	475 aa	Predicted RBP	5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	ZFP64	Q9NPA5	681 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	COPRS	Q9NQ92	184 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	KIAA1522	Q9P206	1035 aa	Predicted RBP	5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	GTF2IRD1	Q9UHL9	959 aa		5.16	□□□□□ -1.58
CNOT1-223	ENST00000628857	PRAMEF27	A3QJZ7	478 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	PGR	P06401	933 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	FAM87A	P0C7U9	286 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	CDK8	P49336	464 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	CDK5R2	Q13319	367 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	ARMCX6	Q7L4S7	300 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	SLITRK4	Q8IW52	837 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	SLFN12	Q8IYM2	578 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	SHISA5	Q8N114	240 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857		Q8N3U1	123 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	MISP3	Q96FF7	219 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	SPATA32	Q96LK8	384 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	ADAMTS1	Q9UHI8	967 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	DDX41	Q9UJV9	622 aa	Known RBP	5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	SNX11	Q9Y5W9	270 aa		5.15	□□□□□ -1.59
CNOT1-223	ENST00000628857	LOC100996750	A0A140TA64	210 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	UNCX	A6NJT0	531 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	MLEC	Q14165	292 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	USP48	Q86UV5	1035 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	METTL16	Q86W50	562 aa	Known RBP	5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	ZNF654	Q8IZM8	581 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	TMEM87B	Q96K49	555 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	KRTAP4-6	Q9BYQ5	205 aa		5.14	□□□□□ -1.59
CNOT1-223	ENST00000628857	EHMT1	Q9H9B1	1298 aa		5.14	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms