RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 TICAM2Q86XR7 235 aa17.7■□□□□ 0.42
PNKP-221ENST00000627317 INHBEP58166 350 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 MIGA2Q7L4E1 593 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 IFNL1Q8IU54 200 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 ZKSCAN4Q969J2 545 aaPredicted RBP17.69■□□□□ 0.42
PNKP-221ENST00000627317 PTPN18Q99952 460 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 ZNF341Q9BYN7 854 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 R3HDMLQ9H3Y0 253 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 DIAPH3Q9NSV4 1193 aa17.69■□□□□ 0.42
PNKP-221ENST00000627317 DDTLA6NHG4 134 aaPredicted RBP17.68■□□□□ 0.42
PNKP-221ENST00000627317 PHF20L1A8MW92 1017 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 HIP1O00291 1037 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 INPP5BP32019 993 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 PICALMQ13492 652 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 BMP2KLQ5H9B9 411 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 ZMYM1Q5SVZ6 1142 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 LCORLQ8N3X6 602 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 RIOK1Q9BRS2 568 aaKnown RBP17.68■□□□□ 0.42
PNKP-221ENST00000627317 CRNKL1Q9BZJ0 848 aaKnown RBP17.68■□□□□ 0.42
PNKP-221ENST00000627317 ARMT1Q9H993 441 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 CSADQ9Y600 493 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 HTTP42858 3142 aa17.68■□□□□ 0.42
PNKP-221ENST00000627317 TBC1D8O95759 1140 aa17.67■□□□□ 0.42
PNKP-221ENST00000627317 USP5P45974 858 aa17.67■□□□□ 0.42
PNKP-221ENST00000627317 NOL9Q5SY16 702 aaKnown RBP17.67■□□□□ 0.42
PNKP-221ENST00000627317 BRI3BPQ8WY22 251 aa17.67■□□□□ 0.42
PNKP-221ENST00000627317 OSBP2Q969R2 916 aa17.67■□□□□ 0.42
PNKP-221ENST00000627317 PUS7LQ9H0K6 701 aaKnown RBP17.67■□□□□ 0.42
PNKP-221ENST00000627317 M0R2C6 588 aa17.66■□□□□ 0.42
PNKP-221ENST00000627317 ALDH1A1P00352 501 aa17.66■□□□□ 0.42
PNKP-221ENST00000627317 SLURP2P0DP57 97 aa17.66■□□□□ 0.42
PNKP-221ENST00000627317 NMIQ13287 307 aaPredicted RBP17.66■□□□□ 0.42
PNKP-221ENST00000627317 ERO1BQ86YB8 467 aa17.66■□□□□ 0.42
PNKP-221ENST00000627317 TGFBRAP1Q8WUH2 860 aa17.66■□□□□ 0.42
PNKP-221ENST00000627317 OTUD5Q96G74 571 aa17.66■□□□□ 0.42
PNKP-221ENST00000627317 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.66■□□□□ 0.42
PNKP-221ENST00000627317 A0A0D9SFI3 127 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 GPAA1O43292 621 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 PPIL2Q13356 520 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 MAPKAPK5Q8IW41 473 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 ZNF296Q8WUU4 475 aaPredicted RBP17.65■□□□□ 0.42
PNKP-221ENST00000627317 ABHD8Q96I13 439 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 FAM227BQ96M60 508 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 SEC62Q99442 399 aaKnown RBP17.65■□□□□ 0.42
PNKP-221ENST00000627317 HELLSQ9NRZ9 838 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 CASP8AP2Q9UKL3 1982 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 FLT1P17948 1338 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 CDK5RAP2Q96SN8 1893 aa17.65■□□□□ 0.42
PNKP-221ENST00000627317 FOCADQ5VW36 1801 aa17.64■□□□□ 0.41
PNKP-221ENST00000627317 GPR25O00155 361 aa17.64■□□□□ 0.41
PNKP-221ENST00000627317 IRF6O14896 467 aa17.64■□□□□ 0.41
PNKP-221ENST00000627317 GTF2A2P52657 109 aa17.64■□□□□ 0.41
PNKP-221ENST00000627317 ZSCAN29Q8IWY8 852 aaPredicted RBP17.64■□□□□ 0.41
PNKP-221ENST00000627317 MCOLN1Q9GZU1 580 aa17.64■□□□□ 0.41
PNKP-221ENST00000627317 OSBPL5Q9H0X9 879 aaPredicted RBP17.64■□□□□ 0.41
PNKP-221ENST00000627317 NAV1Q8NEY1 1877 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 TBC1D12O60347 775 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 PPATQ06203 517 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 MCMDC2Q4G0Z9 681 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 CWC27Q6UX04 472 aaKnown RBP17.63■□□□□ 0.41
PNKP-221ENST00000627317 SDR42E1Q8WUS8 393 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 DDRGK1Q96HY6 314 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 STRBPQ96SI9 672 aaKnown RBP17.63■□□□□ 0.41
PNKP-221ENST00000627317 KCNH4Q9UQ05 1017 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 SLC4A4Q9Y6R1 1079 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 SIPA1L1O43166 1804 aa17.63■□□□□ 0.41
PNKP-221ENST00000627317 CCL15-CCL14A0A0B4J2E2 113 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 GNAT2P19087 354 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 MFAP1P55081 439 aaKnown RBP17.62■□□□□ 0.41
PNKP-221ENST00000627317 CRHR2Q13324 411 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 MOGSQ13724 837 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 CCL15Q16663 113 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 CCDC129Q6ZRS4 1044 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 FAM43AQ8N2R8 423 aa17.62■□□□□ 0.41
PNKP-221ENST00000627317 SAP30BPQ9UHR5 308 aaKnown RBP17.62■□□□□ 0.41
PNKP-221ENST00000627317 PRKAB2O43741 272 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 CHMLP26374 656 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 DGKZQ13574 1117 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 METTL16Q86W50 562 aaKnown RBP17.61■□□□□ 0.41
PNKP-221ENST00000627317 SCYL3Q8IZE3 742 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 RUFY2Q8WXA3 655 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 ATP8A2Q9NTI2 1148 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 CCDC171Q6TFL3 1326 aa17.61■□□□□ 0.41
PNKP-221ENST00000627317 CDC45O75419 566 aa17.6■□□□□ 0.41
PNKP-221ENST00000627317 APPP05067 770 aa17.6■□□□□ 0.41
PNKP-221ENST00000627317 CETPP11597 493 aa17.6■□□□□ 0.41
PNKP-221ENST00000627317 SNAPC2Q13487 334 aa17.6■□□□□ 0.41
PNKP-221ENST00000627317 CASC1Q6TDU7 716 aa17.6■□□□□ 0.41
PNKP-221ENST00000627317 CTU1Q7Z7A3 348 aaKnown RBP17.6■□□□□ 0.41
PNKP-221ENST00000627317 DHX36Q9H2U1 1008 aaKnown RBP17.6■□□□□ 0.41
PNKP-221ENST00000627317 ZCCHC17Q9NP64 241 aaKnown RBP17.6■□□□□ 0.41
PNKP-221ENST00000627317 DCP1AQ9NPI6 582 aaPredicted RBP17.6■□□□□ 0.41
PNKP-221ENST00000627317 RAD50Q92878 1312 aa17.6■□□□□ 0.41
PNKP-221ENST00000627317 MYH1P12882 1939 aa17.59■□□□□ 0.41
PNKP-221ENST00000627317 DDX60LQ5H9U9 1706 aaKnown RBP17.59■□□□□ 0.41
PNKP-221ENST00000627317 FAM196BA6NMK8 535 aa17.59■□□□□ 0.41
PNKP-221ENST00000627317 CTNND1O60716 968 aaKnown RBP17.59■□□□□ 0.41
PNKP-221ENST00000627317 CAPN15O75808 1086 aa17.59■□□□□ 0.41
PNKP-221ENST00000627317 HLA-DOAP06340 250 aa17.59■□□□□ 0.41
PNKP-221ENST00000627317 PTPRAP18433 802 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms