RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 RBL2Q08999 1139 aa16.08■□□□□ 0.17
LDB3-209ENST00000623056 TUBB2AQ13885 445 aa16.08■□□□□ 0.17
LDB3-209ENST00000623056 HSP90AB3PQ58FF7 597 aa16.08■□□□□ 0.17
LDB3-209ENST00000623056 TUBB2BQ9BVA1 445 aa16.08■□□□□ 0.17
LDB3-209ENST00000623056 CTAGE9A4FU28 777 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 ZNF213O14771 459 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 TEX33O43247 280 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 TUBB4BP68371 445 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 STK11IPQ8N1F8 1099 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 FAM71BQ8TC56 605 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 CERKQ8TCT0 537 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.08■□□□□ 0.16
LDB3-209ENST00000623056 CCDC102AQ96A19 550 aa16.08■□□□□ 0.16
LDB3-209ENST00000623056 NAA15Q9BXJ9 866 aaKnown RBP16.08■□□□□ 0.16
LDB3-209ENST00000623056 ANGEL1Q9UNK9 670 aaKnown RBP16.08■□□□□ 0.16
LDB3-209ENST00000623056 MAP3K15Q6ZN16 1313 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 EYA2O00167 538 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 HSP90B2PQ58FF3 399 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 SLC9C2Q5TAH2 1124 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 GRAMD1CQ8IYS0 662 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 CPLX3Q8WVH0 158 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 ZNF594Q96JF6 807 aaPredicted RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 MKRN1Q9UHC7 482 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 SERTAD1Q9UHV2 236 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 DENND2AQ9ULE3 1009 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 KIF1AQ12756 1690 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 EIF3CLB5ME19 914 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 POLR2DO15514 142 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 ZFYP08048 801 aaPredicted RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 ZC3H6P61129 1189 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 GRIN1Q05586 938 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 ICE2Q659A1 982 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 LRRC31Q6UY01 552 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 RASGRP2Q7LDG7 609 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 APTXQ7Z2E3 356 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 PACS2Q86VP3 889 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 PPFIBP1Q86W92 1011 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 SLC35F6Q8N357 371 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 IGSF22Q8N9C0 903 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 EIF3CQ99613 913 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 PUS7LQ9H0K6 701 aaKnown RBP16.07■□□□□ 0.16
LDB3-209ENST00000623056 GBP3Q9H0R5 595 aa16.07■□□□□ 0.16
LDB3-209ENST00000623056 KDM6AO15550 1401 aaPredicted RBP16.06■□□□□ 0.16
LDB3-209ENST00000623056 H7C1W4 665 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 PHACTR2O75167 634 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 SNRPA1P09661 255 aaKnown RBP16.06■□□□□ 0.16
LDB3-209ENST00000623056 PLCD1P51178 756 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 TRDNQ13061 729 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 TRIM29Q14134 588 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 TTC31Q49AM3 519 aaPredicted RBP16.06■□□□□ 0.16
LDB3-209ENST00000623056 NKX2-3Q8TAU0 364 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 AXIN2Q9Y2T1 843 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 ECM29Q5VYK3 1845 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 CTAGE15A4D2H0 777 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 CTAGE8P0CG41 777 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 CPLX2Q6PUV4 134 aaKnown RBP16.06■□□□□ 0.16
LDB3-209ENST00000623056 CYB5R4Q7L1T6 521 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 CTAGE6Q86UF2 777 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 CTAGE4Q8IX94 777 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 TRIML1Q8N9V2 468 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 PLBD2Q8NHP8 589 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 CDC5LQ99459 802 aaKnown RBP16.06■□□□□ 0.16
LDB3-209ENST00000623056 NBPF3Q9H094 633 aa16.06■□□□□ 0.16
LDB3-209ENST00000623056 LRRIQ3A6PVS8 624 aaPredicted RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 SH2B2O14492 632 aaPredicted RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 RANBP6O60518 1105 aaKnown RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 GTF2A1P52655 376 aaPredicted RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 WHAMMP3Q1A5X7 153 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 APOA5Q6Q788 366 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 MICU3Q86XE3 530 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 APPBP2Q92624 585 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 SENP2Q9HC62 589 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 SEC31BQ9NQW1 1179 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 FBXO2Q9UK22 296 aaPredicted RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 CAMTA1Q9Y6Y1 1673 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 UBE2Q2LH0YL09 131 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 MFAP3LO75121 409 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 IARSP41252 1262 aaKnown RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 CABLES1Q8TDN4 633 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 NAPGQ99747 312 aaPredicted RBP16.05■□□□□ 0.16
LDB3-209ENST00000623056 FAM204AQ9H8W3 233 aa16.05■□□□□ 0.16
LDB3-209ENST00000623056 UBN2Q6ZU65 1347 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 ZNF335Q9H4Z2 1342 aaPredicted RBP16.04■□□□□ 0.16
LDB3-209ENST00000623056 GPAA1O43292 621 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 ERCC5P28715 1186 aaPredicted RBP16.04■□□□□ 0.16
LDB3-209ENST00000623056 PBX1P40424 430 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 CORO7P57737 925 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 NTRK3Q16288 839 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 CADPS2Q86UW7 1296 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 TBC1D10CQ8IV04 446 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 PUS3Q9BZE2 481 aaKnown RBP16.04■□□□□ 0.16
LDB3-209ENST00000623056 MED4Q9NPJ6 270 aa16.04■□□□□ 0.16
LDB3-209ENST00000623056 ABL1P00519 1130 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 PTPREP23469 700 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 ADORA1P30542 326 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 DCCP43146 1447 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 TOB1P50616 345 aaPredicted RBP16.03■□□□□ 0.16
LDB3-209ENST00000623056 PIP4K2BP78356 416 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 NOSTRINQ8IVI9 506 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 NOA1Q8NC60 698 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms