RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 USP49Q70CQ1 688 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 HPSEQ9Y251 543 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 NRDCO43847 1150 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 MMP1P03956 469 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 AKAP17AQ02040 695 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 PPARAQ07869 468 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 VPS54Q9P1Q0 977 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 SERTAD1Q9UHV2 236 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 SPEF2Q9C093 1822 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 FAM205CA6NFA0 338 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 PRR29P0C7W0 189 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 EIF5P55010 431 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 DYNLL1P63167 89 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 FANCBQ8NB91 859 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 PPP1R13BQ96KQ4 1090 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 BPIFA3Q9BQP9 254 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 OSBPL5Q9H0X9 879 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 IMPACTQ9P2X3 320 aa14.86□□□□□ -0.03
CCDC88A-214ENST00000621814 MYO5AQ9Y4I1 1855 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 NUTM2BA6NNL0 878 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 NUTM2EB1AL46 878 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 CUTAO60888 179 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 DDB1Q16531 1140 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 NUTM2AQ8IVF1 878 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 ZNF654Q8IZM8 581 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 HSD3B7Q9H2F3 369 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 IFNAR1P17181 557 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 ELF2Q15723 593 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 CCDC150Q8NCX0 1101 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 WASF1Q92558 559 aa14.85□□□□□ -0.03
CCDC88A-214ENST00000621814 LOC102724428A0A0B4J2F2 783 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 MAGEB6P1A0A0J9YX57 407 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 TOP1P11387 765 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 BMP6P22004 513 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 CASP1P29466 404 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 AFMP43652 599 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 SIK1P57059 783 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 ITPK1Q13572 414 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 ALX1Q15699 326 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 KLHL10Q6JEL2 608 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 CRACR2BQ8N4Y2 399 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 TNKSO95271 1327 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 TIGD1Q96MW7 591 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 TUBE1Q9UJT0 475 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 MYH15Q9Y2K3 1946 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 EVX2Q03828 476 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 CREBRFQ8IUR6 639 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 DNAI1Q9UI46 699 aa14.84□□□□□ -0.03
CCDC88A-214ENST00000621814 AKAP11Q9UKA4 1901 aa14.83□□□□□ -0.03
CCDC88A-214ENST00000621814 KCNQ2O43526 872 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 COBLO75128 1261 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 POSTNQ15063 836 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 C3orf67Q6ZVT6 689 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 STAG1Q8WVM7 1258 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 DHX58Q96C10 678 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 ZHX1Q9UKY1 873 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 V9GY48 417 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 CAMTA2O94983 1202 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 DEXIO95424 95 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 STAMQ92783 540 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 CSRNP2Q9H175 543 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 MTMR7Q9Y216 660 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 PAPPAQ13219 1627 aa14.83□□□□□ -0.04
CCDC88A-214ENST00000621814 ATRNO75882 1429 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 SHANK3Q9BYB0 1731 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 IKBKBO14920 756 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 GNAT2P19087 354 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 STX17P56962 302 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 LRRN4CLQ8ND94 238 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 CCDC196A0A1B0GTZ2 297 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 ADKP55263 362 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 FMR1Q06787 632 aaKnown RBP eCLIP14.82□□□□□ -0.042e-10■□□□□ 9.9
CCDC88A-214ENST00000621814 ERFEQ4G0M1 354 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 ESR2Q92731 530 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 SMARCE1Q969G3 411 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 EPSTI1Q96J88 318 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 RNF41Q9H4P4 317 aaPredicted RBP14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 MAN1B1Q9UKM7 699 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 NFE2L3Q9Y4A8 694 aa14.82□□□□□ -0.04
CCDC88A-214ENST00000621814 NMT2O60551 498 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 PLEKHA8P1O95397 391 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 RILPL1Q5EBL4 403 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 EARS2Q5JPH6 523 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 IFIT1BQ5T764 474 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 PKNOX2Q96KN3 472 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 HOOK1Q9UJC3 728 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 FBXO2Q9UK22 296 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 NOM1Q5C9Z4 860 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 ANKRD18AQ8IVF6 992 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 CBFA2T2O43439 604 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 SLU7O95391 586 aaKnown RBP14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 NTSR2O95665 410 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 ZNF174Q15697 407 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 ERCC6LQ2NKX8 1250 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 FAM47AQ5JRC9 791 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 TFCP2L1Q9NZI6 479 aa14.81□□□□□ -0.04
CCDC88A-214ENST00000621814 SMYD4Q8IYR2 804 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 CPLX3Q8WVH0 158 aa14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 SAMSN1Q9NSI8 373 aaKnown RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms