RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PLPPR2Q96GM1 343 aa9.11□□□□□ -0.95
VPS29-212ENST00000621131 PRDM10Q9NQV6 1147 aa9.11□□□□□ -0.95
VPS29-212ENST00000621131 PLAGL2Q9UPG8 496 aa9.11□□□□□ -0.95
VPS29-212ENST00000621131 PCDHB5Q9Y5E4 795 aa9.11□□□□□ -0.95
VPS29-212ENST00000621131 SNCAIPQ9Y6H5 919 aa9.11□□□□□ -0.95
VPS29-212ENST00000621131 CDK8P49336 464 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 MEI1Q5TIA1 1274 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 ZNF574Q6ZN55 896 aaPredicted RBP9.1□□□□□ -0.95
VPS29-212ENST00000621131 CDC37L1Q7L3B6 337 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 HDXQ7Z353 690 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 STK11IPQ8N1F8 1099 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 KCT2Q8NC54 265 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 AGBL5Q8NDL9 886 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 MISP3Q96FF7 219 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 VAV3Q9UKW4 847 aa9.1□□□□□ -0.95
VPS29-212ENST00000621131 PAX4O43316 350 aa9.09□□□□□ -0.95
VPS29-212ENST00000621131 AGMOQ6ZNB7 445 aa9.09□□□□□ -0.95
VPS29-212ENST00000621131 FMNL2Q96PY5 1086 aa9.09□□□□□ -0.95
VPS29-212ENST00000621131 WNT10AQ9GZT5 417 aa9.09□□□□□ -0.95
VPS29-212ENST00000621131 IGF2BP3O00425 579 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS29-212ENST00000621131 GFRA2O00451 464 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 EOMESO95936 686 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 CTSHP09668 335 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 LIG3P49916 1009 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 PRKCQQ04759 706 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 SLBPQ14493 270 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS29-212ENST00000621131 IFI16Q16666 785 aaKnown RBP9.08□□□□□ -0.96
VPS29-212ENST00000621131 TMC4Q7Z404 712 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 FBRSQ9HAH7 460 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 USP31Q70CQ4 1352 aa9.08□□□□□ -0.96
VPS29-212ENST00000621131 PRAMEF27A3QJZ7 478 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 CEACAM5P06731 702 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 CD8BP10966 210 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 TAGLNQ01995 201 aaKnown RBP9.07□□□□□ -0.96
VPS29-212ENST00000621131 PSMD2Q13200 908 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 TAF1CQ15572 869 aaPredicted RBP9.07□□□□□ -0.96
VPS29-212ENST00000621131 MAP3K11Q16584 847 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 KRTAP1-3Q8IUG1 177 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 KRTAP4-12Q9BQ66 201 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 TNKS2Q9H2K2 1166 aa9.07□□□□□ -0.96
VPS29-212ENST00000621131 LRIG2O94898 1065 aa9.06□□□□□ -0.96
VPS29-212ENST00000621131 XPCQ01831 940 aaPredicted RBP9.06□□□□□ -0.96
VPS29-212ENST00000621131 SEPT6Q14141 434 aa9.06□□□□□ -0.96
VPS29-212ENST00000621131 WIPI1Q5MNZ9 446 aaPredicted RBP9.06□□□□□ -0.96
VPS29-212ENST00000621131 ARMCX6Q7L4S7 300 aa9.06□□□□□ -0.96
VPS29-212ENST00000621131 FAM161BQ96MY7 647 aa9.06□□□□□ -0.96
VPS29-212ENST00000621131 GZF1Q9H116 711 aaPredicted RBP9.06□□□□□ -0.96
VPS29-212ENST00000621131 GTF2IRD1Q9UHL9 959 aa9.06□□□□□ -0.96
VPS29-212ENST00000621131 TMEM265A0A087WTH1 108 aa9.05□□□□□ -0.96
VPS29-212ENST00000621131 TFE3P19532 575 aaPredicted RBP9.05□□□□□ -0.96
VPS29-212ENST00000621131 CAP2P40123 477 aa9.05□□□□□ -0.96
VPS29-212ENST00000621131 ST13P50502 369 aaKnown RBP9.05□□□□□ -0.96
VPS29-212ENST00000621131 NKG7Q16617 165 aa9.05□□□□□ -0.96
VPS29-212ENST00000621131 AOC3Q16853 763 aa9.05□□□□□ -0.96
VPS29-212ENST00000621131 ARHGAP27Q6ZUM4 889 aa9.05□□□□□ -0.96
VPS29-212ENST00000621131 NOC4LQ9BVI4 516 aaKnown RBP9.05□□□□□ -0.96
VPS29-212ENST00000621131 SNX11Q9Y5W9 270 aa9.05□□□□□ -0.96
VPS29-212ENST00000621131 SLITRK5O94991 958 aa9.04□□□□□ -0.96
VPS29-212ENST00000621131 FOXQ1Q9C009 403 aa9.04□□□□□ -0.96
VPS29-212ENST00000621131 TACC3Q9Y6A5 838 aa9.04□□□□□ -0.96
VPS29-212ENST00000621131 CNTNAP4Q9C0A0 1308 aa9.04□□□□□ -0.96
VPS29-212ENST00000621131 RLBP1P12271 317 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 ITGB5P18084 799 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 ERCC3P19447 782 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 ITIH2P19823 946 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 FUT4P22083 530 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 CD96P40200 585 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 ETF1P62495 437 aaKnown RBP9.03□□□□□ -0.96
VPS29-212ENST00000621131 NKPD1Q17RQ9 610 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 HID1Q8IV36 788 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 HRASLS5Q96KN8 279 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 TLR6Q9Y2C9 796 aa9.03□□□□□ -0.96
VPS29-212ENST00000621131 LMNB1P20700 586 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 GRK4P32298 578 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 PLCL1Q15111 1095 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 CCDC27Q2M243 656 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 ZNF792Q3KQV3 632 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 SPACA3Q8IXA5 215 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 MFSD2AQ8NA29 543 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 MIR1-1HGQ9H1L0 117 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 RNF114Q9Y508 228 aa9.02□□□□□ -0.97
VPS29-212ENST00000621131 PHC3Q8NDX5 983 aa9.01□□□□□ -0.97
VPS29-212ENST00000621131 RIN3Q8TB24 985 aa9.01□□□□□ -0.97
VPS29-212ENST00000621131 CST3P01034 146 aaPredicted RBP9□□□□□ -0.97
VPS29-212ENST00000621131 TXKP42681 527 aa9□□□□□ -0.97
VPS29-212ENST00000621131 TSNAXIP1Q2TAA8 658 aa9□□□□□ -0.97
VPS29-212ENST00000621131 PRDM5Q9NQX1 630 aaPredicted RBP9□□□□□ -0.97
VPS29-212ENST00000621131 MAPK8IP1Q9UQF2 711 aa9□□□□□ -0.97
VPS29-212ENST00000621131 SORBS3O60504 671 aa8.99□□□□□ -0.97
VPS29-212ENST00000621131 JARID2Q92833 1246 aaPredicted RBP8.99□□□□□ -0.97
VPS29-212ENST00000621131 MIPEPQ99797 713 aa8.99□□□□□ -0.97
VPS29-212ENST00000621131 MBNL3Q9NUK0 354 aaKnown RBP8.99□□□□□ -0.97
VPS29-212ENST00000621131 ADAMTS6Q9UKP5 1117 aa8.99□□□□□ -0.97
VPS29-212ENST00000621131 RNASE1P07998 156 aaKnown RBP8.98□□□□□ -0.97
VPS29-212ENST00000621131 JUNBP17275 347 aaPredicted RBP8.98□□□□□ -0.97
VPS29-212ENST00000621131 RPL6Q02878 288 aaKnown RBP8.98□□□□□ -0.97
VPS29-212ENST00000621131 PRAMEF13Q5VWM6 474 aa8.98□□□□□ -0.97
VPS29-212ENST00000621131 CCDC84Q86UT8 332 aaPredicted RBP8.98□□□□□ -0.97
VPS29-212ENST00000621131 KRTAP19-1Q8IUB9 90 aa8.98□□□□□ -0.97
VPS29-212ENST00000621131 CRELD1Q96HD1 420 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms