RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 USP17L21D6R901 530 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 HLA-DOAP06340 250 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 CYP2D6P10635 497 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 TDO2P48775 406 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 METTL16Q86W50 562 aaKnown RBP23.55■■□□□ 1.36
UPF3A-211ENST00000618700 HOOK2Q96ED9 719 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 NAPBQ9H115 298 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 PI4KBQ9UBF8 816 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 PAPPA2Q9BXP8 1791 aa23.55■■□□□ 1.36
UPF3A-211ENST00000618700 NF2P35240 595 aa23.54■■□□□ 1.36
UPF3A-211ENST00000618700 PLCD1P51178 756 aa23.54■■□□□ 1.36
UPF3A-211ENST00000618700 MAP3K10Q02779 954 aa23.54■■□□□ 1.36
UPF3A-211ENST00000618700 EVX2Q03828 476 aa23.54■■□□□ 1.36
UPF3A-211ENST00000618700 TTC6Q86TZ1 520 aa23.54■■□□□ 1.36
UPF3A-211ENST00000618700 EHD4Q9H223 541 aa23.54■■□□□ 1.36
UPF3A-211ENST00000618700 ROBO3Q96MS0 1386 aa23.53■■□□□ 1.36
UPF3A-211ENST00000618700 CELF2O95319 508 aaKnown RBP23.53■■□□□ 1.36
UPF3A-211ENST00000618700 FGAP02671 866 aa23.53■■□□□ 1.36
UPF3A-211ENST00000618700 POLR3DP05423 398 aaPredicted RBP23.53■■□□□ 1.36
UPF3A-211ENST00000618700 PTH1RQ03431 593 aa23.53■■□□□ 1.36
UPF3A-211ENST00000618700 SLC4A8Q2Y0W8 1093 aa23.53■■□□□ 1.36
UPF3A-211ENST00000618700 C12orf60Q5U649 245 aa23.53■■□□□ 1.36
UPF3A-211ENST00000618700 CST9Q5W186 159 aa23.53■■□□□ 1.36
UPF3A-211ENST00000618700 LSG1Q9H089 658 aaKnown RBP23.53■■□□□ 1.36
UPF3A-211ENST00000618700 CYP2D7A0A087X1C5 515 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 TBC1D12O60347 775 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 GABPAQ06546 454 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 DCAF15Q66K64 600 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 DNAJC18Q9H819 358 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 ZNF408Q9H9D4 720 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 HERC5Q9UII4 1024 aaKnown RBP23.52■■□□□ 1.36
UPF3A-211ENST00000618700 LAMA4Q16363 1823 aa23.52■■□□□ 1.36
UPF3A-211ENST00000618700 SMIM22K7EJ46 135 aa23.51■■□□□ 1.35
UPF3A-211ENST00000618700 SLURP2P0DP57 97 aa23.51■■□□□ 1.35
UPF3A-211ENST00000618700 AMOTL1Q8IY63 956 aa23.51■■□□□ 1.35
UPF3A-211ENST00000618700 FKBP1BP68106 108 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 MAP3K11Q16584 847 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 POTEHQ6S545 545 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 FOXP4Q8IVH2 680 aaPredicted RBP23.5■■□□□ 1.35
UPF3A-211ENST00000618700 MAP4K1Q92918 833 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 ANO2Q9NQ90 1003 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 SERPINB13Q9UIV8 391 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 TAOK2Q9UL54 1235 aa23.5■■□□□ 1.35
UPF3A-211ENST00000618700 OTOFQ9HC10 1997 aa23.49■■□□□ 1.35
UPF3A-211ENST00000618700 FAM196BA6NMK8 535 aa23.49■■□□□ 1.35
UPF3A-211ENST00000618700 PPP1R12BO60237 982 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-211ENST00000618700 KIAA1211Q6ZU35 1233 aa23.49■■□□□ 1.35
UPF3A-211ENST00000618700 MIGA2Q7L4E1 593 aa23.49■■□□□ 1.35
UPF3A-211ENST00000618700 GBA2Q9HCG7 927 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-211ENST00000618700 ANAPC4Q9UJX5 808 aa23.49■■□□□ 1.35
UPF3A-211ENST00000618700 FZD1Q9UP38 647 aa23.49■■□□□ 1.35
UPF3A-211ENST00000618700 MINDY4BA8MYZ0 360 aa23.48■■□□□ 1.35
UPF3A-211ENST00000618700 USP2O75604 605 aaPredicted RBP23.48■■□□□ 1.35
UPF3A-211ENST00000618700 PPARAQ07869 468 aa23.48■■□□□ 1.35
UPF3A-211ENST00000618700 C8orf34Q49A92 452 aa23.48■■□□□ 1.35
UPF3A-211ENST00000618700 C16orf86Q6ZW13 317 aa23.48■■□□□ 1.35
UPF3A-211ENST00000618700 ZNF341Q9BYN7 854 aa23.48■■□□□ 1.35
UPF3A-211ENST00000618700 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.48■■□□□ 1.351e-6■■■□□ 14.9
UPF3A-211ENST00000618700 ZNF112Q9UJU3 913 aa23.48■■□□□ 1.35
UPF3A-211ENST00000618700 PHF20L1A8MW92 1017 aa23.47■■□□□ 1.35
UPF3A-211ENST00000618700 PRKG1Q13976 671 aa23.47■■□□□ 1.35
UPF3A-211ENST00000618700 MOB2Q70IA6 237 aa23.47■■□□□ 1.35
UPF3A-211ENST00000618700 CRACR2BQ8N4Y2 399 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-211ENST00000618700 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.47■■□□□ 1.35
UPF3A-211ENST00000618700 KLRG1Q96E93 195 aa23.47■■□□□ 1.35
UPF3A-211ENST00000618700 DYNLL2Q96FJ2 89 aa23.47■■□□□ 1.35
UPF3A-211ENST00000618700 CTNNA3Q9UI47 895 aa23.47■■□□□ 1.35
UPF3A-211ENST00000618700 ANGEL1Q9UNK9 670 aaKnown RBP23.47■■□□□ 1.35
UPF3A-211ENST00000618700 TMEM88BA6NKF7 163 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 REC8O95072 547 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 HTRA3P83110 453 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 C2orf69Q8N8R5 385 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 SLC44A5Q8NCS7 719 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 NBPF3Q9H094 633 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 SWAP70Q9UH65 585 aa23.46■■□□□ 1.35
UPF3A-211ENST00000618700 RBM8AQ9Y5S9 174 aaKnown RBP23.46■■□□□ 1.35
UPF3A-211ENST00000618700 SHMT1P34896 483 aa23.45■■□□□ 1.34
UPF3A-211ENST00000618700 IREB2P48200 963 aaKnown RBP23.45■■□□□ 1.34
UPF3A-211ENST00000618700 LDLRAD1Q5T700 205 aa23.45■■□□□ 1.34
UPF3A-211ENST00000618700 TATDN1Q6P1N9 297 aa23.45■■□□□ 1.34
UPF3A-211ENST00000618700 ARMC9Q7Z3E5 817 aa23.45■■□□□ 1.34
UPF3A-211ENST00000618700 WRNIP1Q96S55 665 aa23.45■■□□□ 1.34
UPF3A-211ENST00000618700 TRIM34Q9BYJ4 488 aa23.45■■□□□ 1.34
UPF3A-211ENST00000618700 HAND2P61296 217 aa23.44■■□□□ 1.34
UPF3A-211ENST00000618700 TTLL12Q14166 644 aaPredicted RBP23.44■■□□□ 1.34
UPF3A-211ENST00000618700 UNCXA6NJT0 531 aa23.43■■□□□ 1.34
UPF3A-211ENST00000618700 EPB41L2O43491 1005 aaKnown RBP23.43■■□□□ 1.34
UPF3A-211ENST00000618700 INPP5BP32019 993 aa23.43■■□□□ 1.34
UPF3A-211ENST00000618700 CDK8P49336 464 aa23.43■■□□□ 1.34
UPF3A-211ENST00000618700 CTDSPL2Q05D32 466 aa23.43■■□□□ 1.34
UPF3A-211ENST00000618700 RRP1BQ14684 758 aaKnown RBP23.43■■□□□ 1.34
UPF3A-211ENST00000618700 IMMTQ16891 758 aaKnown RBP23.43■■□□□ 1.34
UPF3A-211ENST00000618700 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.43■■□□□ 1.34
UPF3A-211ENST00000618700 TACC3Q9Y6A5 838 aa23.43■■□□□ 1.34
UPF3A-211ENST00000618700 TLL2Q9Y6L7 1015 aa23.43■■□□□ 1.34
UPF3A-211ENST00000618700 UBE2Q2LH0YL09 131 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 ZNF213O14771 459 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 SLC3A2P08195 630 aaKnown RBP23.42■■□□□ 1.34
UPF3A-211ENST00000618700 CYP21A2P08686 494 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 FGRP09769 529 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms