RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 SPTLC3Q9NUV7 552 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 SERPINI2O75830 405 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 CUTAO60888 179 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 SYTL4Q96C24 671 aaPredicted RBP9.73□□□□□ -0.85
TTC28-208ENST00000612946 TTC21BQ7Z4L5 1316 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 EIF3CLB5ME19 914 aaKnown RBP9.72□□□□□ -0.85
TTC28-208ENST00000612946 EIF3CQ99613 913 aaKnown RBP9.72□□□□□ -0.85
TTC28-208ENST00000612946 CDC23Q9UJX2 597 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 HYOU1Q9Y4L1 999 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 ARHGAP4P98171 946 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 FGD4Q96M96 766 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 TRIM60Q495X7 471 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 PALMDQ9NP74 551 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 ALDH1L1O75891 902 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 SLF2Q8IX21 1173 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 ZNF280CQ8ND82 737 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 USP26Q9BXU7 913 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 EXOC6BQ9Y2D4 811 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 TXNDC9O14530 226 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 NEK2P51955 445 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 IFT88Q13099 833 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 CUL1Q13616 776 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 C10orf88Q9H8K7 445 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 MRFAP1Q9Y605 127 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 COMMD10Q9Y6G5 202 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 FKBP4Q02790 459 aaKnown RBP eCLIP9.72□□□□□ -0.85
TTC28-208ENST00000612946 NR1H3Q13133 447 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 DDX21Q9NR30 783 aaKnown RBP eCLIP9.72□□□□□ -0.85
TTC28-208ENST00000612946 ZFYVE9O95405 1425 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 SNX16P57768 344 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 CATSPER1Q8NEC5 780 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 ZNF653Q96CK0 615 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 TDRD9Q8NDG6 1382 aaKnown RBP9.72□□□□□ -0.85
TTC28-208ENST00000612946 STK10O94804 968 aaKnown RBP9.72□□□□□ -0.85
TTC28-208ENST00000612946 GNA14O95837 355 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 LONRF2Q1L5Z9 754 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 ISM2Q6H9L7 571 aa9.72□□□□□ -0.85
TTC28-208ENST00000612946 IFIH1Q9BYX4 1025 aaKnown RBP9.72□□□□□ -0.85
TTC28-208ENST00000612946 ESRRBO95718 433 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 PLCD1P51178 756 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 TLDC2A0PJX2 215 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 ARHGAP42A6NI28 874 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 FANCD2Q9BXW9 1451 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 ARHGAP31Q2M1Z3 1444 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 CALR3Q96L12 384 aaKnown RBP9.71□□□□□ -0.85
TTC28-208ENST00000612946 NUB1Q9Y5A7 615 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 PTPRGP23470 1445 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 MYO10Q9HD67 2058 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 SERPINB10P48595 397 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 GLE1Q53GS7 698 aaKnown RBP9.71□□□□□ -0.85
TTC28-208ENST00000612946 TCERG1LQ5VWI1 586 aa9.71□□□□□ -0.85
TTC28-208ENST00000612946 TTC36A6NLP5 189 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 JPH4Q96JJ6 628 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 DONSONQ9NYP3 566 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 STXBP3O00186 592 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 PDE1AP54750 535 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 BRF1Q92994 677 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 STK38LQ9Y2H1 464 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 SART1O43290 800 aaKnown RBP9.71□□□□□ -0.86
TTC28-208ENST00000612946 MRPS25P82663 173 aaKnown RBP9.71□□□□□ -0.86
TTC28-208ENST00000612946 TDRD7Q8NHU6 1098 aaKnown RBP9.71□□□□□ -0.86
TTC28-208ENST00000612946 NECTIN2Q92692 538 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 PSD3Q9NYI0 1048 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 ABCC2Q92887 1545 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 ITIH3Q06033 890 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 CCDC25Q86WR0 208 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 ORC6Q9Y5N6 252 aa9.71□□□□□ -0.86
TTC28-208ENST00000612946 RPS6KA1Q15418 735 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 ANKRD44Q8N8A2 993 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 POLR3AO14802 1390 aaPredicted RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 PPP2R5BQ15173 497 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 C16orf87Q6PH81 154 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 SERPINA10Q9UK55 444 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 AMOTL2Q9Y2J4 779 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 ZBTB43O43298 467 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 DCTN3O75935 186 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 ASIC1P78348 528 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 STRN3Q13033 797 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 ABTB1Q969K4 478 aaPredicted RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 BLVRAP53004 296 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 RBM6P78332 1123 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 PAWRQ96IZ0 340 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 TMEM67Q5HYA8 995 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 PPANQ9NQ55 473 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 PLXNC1O60486 1568 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 PUS7Q96PZ0 661 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 MRPL40Q9NQ50 206 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 IFIT3O14879 490 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 KRT3P12035 628 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 HSPA6P17066 643 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 DHX9Q08211 1270 aaKnown RBP9.7□□□□□ -0.86
TTC28-208ENST00000612946 IWS1Q96ST2 819 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 MFSD6Q6ZSS7 791 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 NPC1L1Q9UHC9 1359 aa9.7□□□□□ -0.86
TTC28-208ENST00000612946 NUTM2FA1L443 756 aa9.69□□□□□ -0.86
TTC28-208ENST00000612946 PDE4BQ07343 736 aa9.69□□□□□ -0.86
TTC28-208ENST00000612946 NUTM2GQ5VZR2 741 aa9.69□□□□□ -0.86
TTC28-208ENST00000612946 RGS12O14924 1447 aa9.69□□□□□ -0.86
TTC28-208ENST00000612946 CCDC93Q567U6 631 aa9.69□□□□□ -0.86
TTC28-208ENST00000612946 PACSIN2Q9UNF0 486 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms