RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TEX11Q8IYF3 940 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 PANK1Q8TE04 598 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 TGFBRAP1Q8WUH2 860 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 EAF2Q96CJ1 260 aaPredicted RBP9.34□□□□□ -0.91
CUX1-219ENST00000606749 NOL10Q9BSC4 688 aaKnown RBP9.34□□□□□ -0.91
CUX1-219ENST00000606749 AATFQ9NY61 560 aaKnown RBP eCLIP9.34□□□□□ -0.91
CUX1-219ENST00000606749 PI4KBQ9UBF8 816 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 DBNLQ9UJU6 430 aaKnown RBP9.34□□□□□ -0.91
CUX1-219ENST00000606749 BRCA2P51587 3418 aa9.34□□□□□ -0.91
CUX1-219ENST00000606749 ZBED9Q6R2W3 1325 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 IGSF3O75054 1194 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 FCGRTP55899 365 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 SPP2Q13103 211 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 ZNF280CQ8ND82 737 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 DHX36Q9H2U1 1008 aaKnown RBP9.33□□□□□ -0.92
CUX1-219ENST00000606749 PIH1D3Q9NQM4 214 aaKnown RBP9.33□□□□□ -0.92
CUX1-219ENST00000606749 TLR7Q9NYK1 1049 aaKnown RBP9.33□□□□□ -0.92
CUX1-219ENST00000606749 HERC5Q9UII4 1024 aaKnown RBP9.33□□□□□ -0.92
CUX1-219ENST00000606749 AGTPBP1Q9UPW5 1226 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 PDE4DIPQ5VU43 2346 aa9.33□□□□□ -0.92
CUX1-219ENST00000606749 COL2A1P02458 1487 aaPredicted RBP9.33□□□□□ -0.92
CUX1-219ENST00000606749 KIAA0100Q14667 2235 aaKnown RBP9.32□□□□□ -0.92
CUX1-219ENST00000606749 USP17L5A8MUK1 530 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 GRK4P32298 578 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 MTFR1Q15390 333 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 TREML2Q5T2D2 321 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 METTL16Q86W50 562 aaKnown RBP9.32□□□□□ -0.92
CUX1-219ENST00000606749 FOXP4Q8IVH2 680 aaPredicted RBP9.32□□□□□ -0.92
CUX1-219ENST00000606749 RAET1EQ8TD07 263 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 TBC1D2Q9BYX2 928 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 PALD1Q9ULE6 856 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 GABRQQ9UN88 632 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 ZSWIM8A7E2V4 1837 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 DOCK2Q92608 1830 aa9.32□□□□□ -0.92
CUX1-219ENST00000606749 MYPNQ86TC9 1320 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 MS4A1P11836 297 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 CYP7A1P22680 504 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 DYNLL1P63167 89 aaKnown RBP9.31□□□□□ -0.92
CUX1-219ENST00000606749 JAG1P78504 1218 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 PRKCZQ05513 592 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 ERC1Q8IUD2 1116 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 MAPKAPK5Q8IW41 473 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 ANKRD13CQ8N6S4 541 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 PROCA1Q8NCQ7 364 aaPredicted RBP9.31□□□□□ -0.92
CUX1-219ENST00000606749 SMCR8Q8TEV9 937 aaPredicted RBP9.31□□□□□ -0.92
CUX1-219ENST00000606749 ANTXR1Q9H6X2 564 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 EXOC6BQ9Y2D4 811 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 NDUFB9Q9Y6M9 179 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 PHIPQ8WWQ0 1821 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 FLT1P17948 1338 aa9.31□□□□□ -0.92
CUX1-219ENST00000606749 RBBP6Q7Z6E9 1792 aaKnown RBP9.3□□□□□ -0.92
CUX1-219ENST00000606749 IDH1O75874 414 aaKnown RBP9.3□□□□□ -0.92
CUX1-219ENST00000606749 FLT3LGP49771 235 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 HMGCS2P54868 508 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 HSP90AB4PQ58FF6 505 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 SH3D19Q5HYK7 790 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 AACSQ86V21 672 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 MAGEB6Q8N7X4 407 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 WDR18Q9BV38 432 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 DNAJC18Q9H819 358 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 AS3MTQ9HBK9 375 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 BIN2Q9UBW5 565 aaPredicted RBP9.3□□□□□ -0.92
CUX1-219ENST00000606749 SAP30BPQ9UHR5 308 aaKnown RBP9.3□□□□□ -0.92
CUX1-219ENST00000606749 PNMA3Q9UL41 463 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 DOCK1Q14185 1865 aa9.3□□□□□ -0.92
CUX1-219ENST00000606749 TNPO2O14787 897 aaKnown RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 ADCY3O60266 1144 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 ASNSP08243 561 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 CCL5P13501 91 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 GCLCP48506 637 aaPredicted RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 BACE1P56817 501 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 MAP3K12Q12852 859 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 PABPC4Q13310 644 aaKnown RBP eCLIP9.29□□□□□ -0.92
CUX1-219ENST00000606749 SHROOM1Q2M3G4 852 aaPredicted RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 TMED8Q6PL24 325 aaPredicted RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 CERS3Q8IU89 383 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 SIRT2Q8IXJ6 389 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 RPAP2Q8IXW5 612 aaPredicted RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 CRACR2BQ8N4Y2 399 aaPredicted RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 MIGA1Q8NAN2 632 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 SLAIN1Q8ND83 568 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 NKX2-3Q8TAU0 364 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 RHPN1Q8TCX5 695 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 GCC1Q96CN9 775 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 RNF208Q9H0X6 261 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 ASCC2Q9H1I8 757 aaPredicted RBP9.29□□□□□ -0.92
CUX1-219ENST00000606749 IL1RAPL2Q9NP60 686 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 GINM1Q9NU53 330 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 ZBTB40Q9NUA8 1239 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 COG6Q9Y2V7 657 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 PTPRFP10586 1907 aa9.29□□□□□ -0.92
CUX1-219ENST00000606749 MYO5AQ9Y4I1 1855 aaKnown RBP9.28□□□□□ -0.92
CUX1-219ENST00000606749 C19orf81C9J6K1 198 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 HLA-DOAP06340 250 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 GJB1P08034 283 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 HOXA7P31268 230 aaPredicted RBP9.28□□□□□ -0.92
CUX1-219ENST00000606749 USP5P45974 858 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 GJA8P48165 433 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 UBXN2AP68543 259 aa9.28□□□□□ -0.92
CUX1-219ENST00000606749 IRF5Q13568 498 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms