RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 CCDC171Q6TFL3 1326 aa12□□□□□ -0.49
UPF1-213ENST00000601981 ATAD5Q96QE3 1844 aa12□□□□□ -0.49
UPF1-213ENST00000601981 MCCP23508 829 aa11.99□□□□□ -0.49
UPF1-213ENST00000601981 RABEP1Q15276 862 aa11.99□□□□□ -0.49
UPF1-213ENST00000601981 FOXP4Q8IVH2 680 aaPredicted RBP11.99□□□□□ -0.49
UPF1-213ENST00000601981 SEC62Q99442 399 aaKnown RBP11.99□□□□□ -0.49
UPF1-213ENST00000601981 NAPBQ9H115 298 aa11.99□□□□□ -0.49
UPF1-213ENST00000601981 SAP30BPQ9UHR5 308 aaKnown RBP11.99□□□□□ -0.49
UPF1-213ENST00000601981 PALD1Q9ULE6 856 aa11.99□□□□□ -0.49
UPF1-213ENST00000601981 SIPA1L1O43166 1804 aa11.99□□□□□ -0.49
UPF1-213ENST00000601981 DOCK1Q14185 1865 aa11.99□□□□□ -0.49
UPF1-213ENST00000601981 SSC5DA1L4H1 1573 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 DDTLA6NHG4 134 aaPredicted RBP11.98□□□□□ -0.49
UPF1-213ENST00000601981 PRKAB2O43741 272 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 TBC1D12O60347 775 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 SLC3A2P08195 630 aaKnown RBP11.98□□□□□ -0.49
UPF1-213ENST00000601981 HUNKP57058 714 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 ANAPC15P60006 121 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 FMR1Q06787 632 aaKnown RBP eCLIP11.98□□□□□ -0.494e-8■■□□□ 13.3
UPF1-213ENST00000601981 PRKG1Q13976 671 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 MAP3K11Q16584 847 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 COL13A1Q5TAT6 717 aaPredicted RBP11.98□□□□□ -0.49
UPF1-213ENST00000601981 CST9Q5W186 159 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 DLK2Q6UY11 383 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 HSCBQ8IWL3 235 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 ZFPM1Q8IX07 1006 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 IL17RAQ96F46 866 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 TBC1D2Q9BYX2 928 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 EHD4Q9H223 541 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.98□□□□□ -0.494e-6■■■□□ 14.7
UPF1-213ENST00000601981 ZNF287Q9HBT7 754 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 ANO2Q9NQ90 1003 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 SERPINB13Q9UIV8 391 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 CSADQ9Y600 493 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 TLL2Q9Y6L7 1015 aa11.98□□□□□ -0.49
UPF1-213ENST00000601981 LAMA4Q16363 1823 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 GSG1L2A8MUP6 293 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 CCDC129Q6ZRS4 1044 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 KIAA1211Q6ZU35 1233 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 PAXIP1Q6ZW49 1069 aaPredicted RBP11.97□□□□□ -0.49
UPF1-213ENST00000601981 MIGA2Q7L4E1 593 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 SH3BP5LQ7L8J4 393 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 SAPCD2Q86UD0 394 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 ANKRD13AQ8IZ07 590 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 IFNL3Q8IZI9 196 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 IL27Q8NEV9 243 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 HHIPL1Q96JK4 782 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 WRNIP1Q96S55 665 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 SWAP70Q9UH65 585 aa11.97□□□□□ -0.49
UPF1-213ENST00000601981 MKRN1Q9UHC7 482 aaKnown RBP11.97□□□□□ -0.49
UPF1-213ENST00000601981 ZMYM6O95789 1325 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 USP17L12C9JPN9 530 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 USP17L21D6R901 530 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 USP2O75604 605 aaPredicted RBP11.96□□□□□ -0.49
UPF1-213ENST00000601981 HSPD1P10809 573 aaKnown RBP11.96□□□□□ -0.49
UPF1-213ENST00000601981 ECE1P42892 770 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 MAP3K9P80192 1104 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 SBK1Q52WX2 424 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 ZNF589Q86UQ0 364 aaPredicted RBP11.96□□□□□ -0.49
UPF1-213ENST00000601981 CDAN1Q8IWY9 1227 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 DSCC1Q9BVC3 393 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 LSG1Q9H089 658 aaKnown RBP11.96□□□□□ -0.49
UPF1-213ENST00000601981 IL25Q9H293 177 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 CTNNA3Q9UI47 895 aa11.96□□□□□ -0.49
UPF1-213ENST00000601981 MINDY4BA8MYZ0 360 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 SLC4A3P48751 1232 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 MAP3K10Q02779 954 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 ALX1Q15699 326 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 SLC4A8Q2Y0W8 1093 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 DEFB115Q30KQ5 88 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 C12orf60Q5U649 245 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 RGMBQ6NW40 437 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 CTR9Q6PD62 1173 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 POTEDQ86YR6 584 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.95□□□□□ -0.5
UPF1-213ENST00000601981 EPB41L4AQ9HCS5 686 aaPredicted RBP11.95□□□□□ -0.5
UPF1-213ENST00000601981 GINM1Q9NU53 330 aa11.95□□□□□ -0.5
UPF1-213ENST00000601981 RASSF10A6NK89 507 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 UBE2Q2LH0YL09 131 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 CTNND1O60716 968 aaKnown RBP11.94□□□□□ -0.5
UPF1-213ENST00000601981 HSPA4P34932 840 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 ZNF157P51786 506 aaPredicted RBP11.94□□□□□ -0.5
UPF1-213ENST00000601981 PDE4BQ07343 736 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 LDLRAD1Q5T700 205 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 METTL16Q86W50 562 aaKnown RBP11.94□□□□□ -0.5
UPF1-213ENST00000601981 CCDC102AQ96A19 550 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 SLC10A4Q96EP9 437 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 PICK1Q9NRD5 415 aa11.94□□□□□ -0.5
UPF1-213ENST00000601981 ROBO3Q96MS0 1386 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 PLCD1P51178 756 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 PPARAQ07869 468 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 IMMTQ16891 758 aaKnown RBP11.93□□□□□ -0.5
UPF1-213ENST00000601981 NOL9Q5SY16 702 aaKnown RBP11.93□□□□□ -0.5
UPF1-213ENST00000601981 VPS53Q5VIR6 699 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 MOB2Q70IA6 237 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 SCYL3Q8IZE3 742 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 MKNK2Q9HBH9 465 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 CABP5Q9NP86 173 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 ZNF112Q9UJU3 913 aa11.93□□□□□ -0.5
UPF1-213ENST00000601981 U3KPZ7 1027 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms