RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	HERC5	Q9UII4	1024 aa	Known RBP	10.67	□□□□□ -0.7
SSBP4-208	ENST00000600628	CSAD	Q9Y600	493 aa		10.67	□□□□□ -0.7
SSBP4-208	ENST00000600628	LOC285556	D6RIA3	1793 aa		10.67	□□□□□ -0.7
SSBP4-208	ENST00000600628	MKI67	P46013	3256 aa	Known RBP	10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	TBC1D8	O95759	1140 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	CHGB	P05060	677 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	PTPRA	P18433	802 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	GABPA	Q06546	454 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	PICALM	Q13492	652 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	TATDN1	Q6P1N9	297 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	TICAM2	Q86XR7	235 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	SCYL3	Q8IZE3	742 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	MIGA1	Q8NAN2	632 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	DNAJC2	Q99543	621 aa	Known RBP	10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	EHD4	Q9H223	541 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	PI4KB	Q9UBF8	816 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	AFG3L2	Q9Y4W6	797 aa		10.66	□□□□□ -0.7
SSBP4-208	ENST00000600628	ALDH1A1	P00352	501 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	GTF2A2	P52657	109 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	JAG1	P78504	1218 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	NUCB1	Q02818	461 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	SLFNL1	Q499Z3	407 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	TSHZ3	Q63HK5	1081 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	OSBPL3	Q9H4L5	887 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	TAOK2	Q9UL54	1235 aa		10.65	□□□□□ -0.7
SSBP4-208	ENST00000600628	GREB1L	Q9C091	1923 aa	Predicted RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	ADGRA2	Q96PE1	1338 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628		A0A0G2JLL6	359 aa	Predicted RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	CXCL11	O14625	94 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	CAPN15	O75808	1086 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	GLRX3	O76003	335 aa	Known RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	MX1	P20591	662 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	CAP2	P40123	477 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	PDE1A	P54750	535 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	MAPKAPK5	Q8IW41	473 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	LCORL	Q8N3X6	602 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	OTUD5	Q96G74	571 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	ABHD8	Q96I13	439 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	NOL10	Q9BSC4	688 aa	Known RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	PUS7L	Q9H0K6	701 aa	Known RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	RWDD1	Q9H446	243 aa	Predicted RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	DCP1A	Q9NPI6	582 aa	Predicted RBP	10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	GINM1	Q9NU53	330 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	PALD1	Q9ULE6	856 aa		10.64	□□□□□ -0.71
SSBP4-208	ENST00000600628	MYH8	P13535	1937 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	MAGEB6P1	A0A0J9YX57	407 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	FAM196B	A6NMK8	535 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	GPR25	O00155	361 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	SNAPC2	Q13487	334 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	ANKRD45	Q5TZF3	282 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	OTUD7B	Q6GQQ9	843 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	GPAT2	Q6NUI2	795 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	FAM43A	Q8N2R8	423 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	ZNF296	Q8WUU4	475 aa	Predicted RBP	10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	OSBP2	Q969R2	916 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	GPATCH3	Q96I76	525 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	STRBP	Q96SI9	672 aa	Known RBP	10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.63	□□□□□ -0.71	7e-8	■■■■□ 23.9
SSBP4-208	ENST00000600628	MCOLN1	Q9GZU1	580 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	ATP8A2	Q9NTI2	1148 aa		10.63	□□□□□ -0.71
SSBP4-208	ENST00000600628	CCL15-CCL14	A0A0B4J2E2	113 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	BTBD19	C9JJ37	291 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	ERC2	O15083	957 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	ZFY	P08048	801 aa	Predicted RBP	10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	CETP	P11597	493 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	SHMT1	P34896	483 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	PLCD1	P51178	756 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	CAP1	Q01518	475 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	EVX2	Q03828	476 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	CRHR2	Q13324	411 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	DGKZ	Q13574	1117 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	CCL15	Q16663	113 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	SH3D19	Q5HYK7	790 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	GIMAP6	Q6P9H5	292 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	CHD1L	Q86WJ1	897 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	WDR18	Q9BV38	432 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	TBC1D2	Q9BYX2	928 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	SERPINB13	Q9UIV8	391 aa		10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	TNRC18	O15417	2968 aa	Predicted RBP	10.62	□□□□□ -0.71
SSBP4-208	ENST00000600628	GSG1L2	A8MUP6	293 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	FOXP2	O15409	715 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	RNF113A	O15541	343 aa	Known RBP	10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	PRKAB2	O43741	272 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	MBD4	O95243	580 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	SHROOM1	Q2M3G4	852 aa	Predicted RBP	10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	ZMYM1	Q5SVZ6	1142 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	C12orf60	Q5U649	245 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	ZSCAN25	Q6NSZ9	544 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	ANKRD23	Q86SG2	305 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	PLEKHM2	Q8IWE5	1019 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	SDR42E1	Q8WUS8	393 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	APPBP2	Q92624	585 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	ARMT1	Q9H993	441 aa		10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.61	□□□□□ -0.71
SSBP4-208	ENST00000600628	SLC45A1	Q9Y2W3	748 aa		10.61	□□□□□ -0.71

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