RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SLC9C2Q5TAH2 1124 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 MIGA2Q7L4E1 593 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 EDC3Q96F86 508 aaKnown RBP19.6■□□□□ 0.73
LSM4-206ENST00000600289 RIOK1Q9BRS2 568 aaKnown RBP19.6■□□□□ 0.73
LSM4-206ENST00000600289 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.6■□□□□ 0.733e-8■■□□□ 14.5
LSM4-206ENST00000600289 BCL11AQ9H165 835 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 DHX36Q9H2U1 1008 aaKnown RBP19.6■□□□□ 0.73
LSM4-206ENST00000600289 SNCAIPQ9Y6H5 919 aa19.6■□□□□ 0.73
LSM4-206ENST00000600289 MANSC4A6NHS7 340 aaPredicted RBP19.59■□□□□ 0.73
LSM4-206ENST00000600289 ADD2P35612 726 aa19.59■□□□□ 0.73
LSM4-206ENST00000600289 DYNLL1P63167 89 aaKnown RBP19.59■□□□□ 0.73
LSM4-206ENST00000600289 ZSCAN29Q8IWY8 852 aaPredicted RBP19.59■□□□□ 0.73
LSM4-206ENST00000600289 OPTNQ96CV9 577 aa19.59■□□□□ 0.73
LSM4-206ENST00000600289 ELP3Q9H9T3 547 aa19.59■□□□□ 0.73
LSM4-206ENST00000600289 ZNF532Q9HCE3 1301 aa19.58■□□□□ 0.73
LSM4-206ENST00000600289 PHF20L1A8MW92 1017 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 ERC2O15083 957 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 MX1P20591 662 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 GJA5P36382 358 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 ANKRD45Q5TZF3 282 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 OTOP1Q7RTM1 612 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 ERO1BQ86YB8 467 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 PI4K2BQ8TCG2 481 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 ZBTB47Q9UFB7 747 aaPredicted RBP19.58■□□□□ 0.72
LSM4-206ENST00000600289 TRIM17Q9Y577 477 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 MYH8P13535 1937 aa19.58■□□□□ 0.72
LSM4-206ENST00000600289 TESPA1A2RU30 521 aaPredicted RBP19.57■□□□□ 0.72
LSM4-206ENST00000600289 GLRX3O76003 335 aaKnown RBP19.57■□□□□ 0.72
LSM4-206ENST00000600289 INPP5BP32019 993 aa19.57■□□□□ 0.72
LSM4-206ENST00000600289 UBE3CQ15386 1083 aa19.57■□□□□ 0.72
LSM4-206ENST00000600289 ZSCAN25Q6NSZ9 544 aa19.57■□□□□ 0.72
LSM4-206ENST00000600289 METTL16Q86W50 562 aaKnown RBP19.57■□□□□ 0.72
LSM4-206ENST00000600289 MIGA1Q8NAN2 632 aa19.57■□□□□ 0.72
LSM4-206ENST00000600289 TGFBRAP1Q8WUH2 860 aa19.57■□□□□ 0.72
LSM4-206ENST00000600289 ZKSCAN4Q969J2 545 aaPredicted RBP19.57■□□□□ 0.72
LSM4-206ENST00000600289 STAP2Q9UGK3 403 aa19.57■□□□□ 0.72
LSM4-206ENST00000600289 HERC5Q9UII4 1024 aaKnown RBP19.57■□□□□ 0.72
LSM4-206ENST00000600289 BAZ2AQ9UIF9 1905 aaKnown RBP19.57■□□□□ 0.72
LSM4-206ENST00000600289 MAGEB6P1A0A0J9YX57 407 aa19.56■□□□□ 0.72
LSM4-206ENST00000600289 IGHDP01880 384 aa19.56■□□□□ 0.72
LSM4-206ENST00000600289 PPATQ06203 517 aa19.56■□□□□ 0.72
LSM4-206ENST00000600289 MAPKAPK5Q8IW41 473 aa19.56■□□□□ 0.72
LSM4-206ENST00000600289 KBTBD3Q8NAB2 608 aa19.56■□□□□ 0.72
LSM4-206ENST00000600289 OTUD7AQ8TE49 926 aaPredicted RBP19.56■□□□□ 0.72
LSM4-206ENST00000600289 PI4KBQ9UBF8 816 aa19.56■□□□□ 0.72
LSM4-206ENST00000600289 MKRN3Q13064 507 aaKnown RBP19.55■□□□□ 0.72
LSM4-206ENST00000600289 PPIL2Q13356 520 aa19.55■□□□□ 0.72
LSM4-206ENST00000600289 TSHZ3Q63HK5 1081 aa19.55■□□□□ 0.72
LSM4-206ENST00000600289 ARMC5Q96C12 935 aa19.55■□□□□ 0.72
LSM4-206ENST00000600289 H0YGN5 161 aa19.54■□□□□ 0.72
LSM4-206ENST00000600289 CTNND1O60716 968 aaKnown RBP19.54■□□□□ 0.72
LSM4-206ENST00000600289 ALDH1A1P00352 501 aa19.54■□□□□ 0.72
LSM4-206ENST00000600289 SCYL3Q8IZE3 742 aa19.54■□□□□ 0.72
LSM4-206ENST00000600289 MS4A4AQ96JQ5 239 aa19.54■□□□□ 0.72
LSM4-206ENST00000600289 LOC285556D6RIA3 1793 aa19.54■□□□□ 0.72
LSM4-206ENST00000600289 USP5P45974 858 aa19.53■□□□□ 0.72
LSM4-206ENST00000600289 GTF2A2P52657 109 aa19.53■□□□□ 0.72
LSM4-206ENST00000600289 FOXP4Q8IVH2 680 aaPredicted RBP19.53■□□□□ 0.72
LSM4-206ENST00000600289 CNKSR2Q8WXI2 1034 aa19.53■□□□□ 0.72
LSM4-206ENST00000600289 CRNKL1Q9BZJ0 848 aaKnown RBP19.53■□□□□ 0.72
LSM4-206ENST00000600289 ZFYP08048 801 aaPredicted RBP19.52■□□□□ 0.72
LSM4-206ENST00000600289 PDE1AP54750 535 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 NUCB1Q02818 461 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 IFNL1Q8IU54 200 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 LCORLQ8N3X6 602 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 EHD4Q9H223 541 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.52■□□□□ 0.72
LSM4-206ENST00000600289 KCNH4Q9UQ05 1017 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 PTPN22Q9Y2R2 807 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 LAMA3Q16787 3333 aa19.52■□□□□ 0.72
LSM4-206ENST00000600289 HLA-DOAP06340 250 aa19.51■□□□□ 0.71
LSM4-206ENST00000600289 LRRFIP1Q32MZ4 808 aaKnown RBP19.51■□□□□ 0.71
LSM4-206ENST00000600289 CHD1LQ86WJ1 897 aa19.51■□□□□ 0.71
LSM4-206ENST00000600289 TICAM2Q86XR7 235 aa19.51■□□□□ 0.71
LSM4-206ENST00000600289 ZCCHC17Q9NP64 241 aaKnown RBP19.51■□□□□ 0.71
LSM4-206ENST00000600289 TAOK2Q9UL54 1235 aa19.51■□□□□ 0.71
LSM4-206ENST00000600289 PALD1Q9ULE6 856 aa19.51■□□□□ 0.71
LSM4-206ENST00000600289 UNC80Q8N2C7 3258 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 IGF2BP3O00425 579 aaKnown RBP eCLIP19.5■□□□□ 0.71
LSM4-206ENST00000600289 IRF6O14896 467 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 MBD4O95243 580 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 SLURP2P0DP57 97 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 IRX6P78412 446 aaPredicted RBP19.5■□□□□ 0.71
LSM4-206ENST00000600289 SNAPC2Q13487 334 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 OTUD7BQ6GQQ9 843 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 CHRDL2Q6WN34 429 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 LNPKQ9C0E8 428 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 DNAJC18Q9H819 358 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 ATP8A2Q9NTI2 1148 aa19.5■□□□□ 0.71
LSM4-206ENST00000600289 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.5■□□□□ 0.71
LSM4-206ENST00000600289 RNF113AO15541 343 aaKnown RBP19.49■□□□□ 0.71
LSM4-206ENST00000600289 CETPP11597 493 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 PTPRAP18433 802 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 TTC6Q86TZ1 520 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 BRI3BPQ8WY22 251 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 APPBP2Q92624 585 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 PTPN18Q99952 460 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 TBC1D2Q9BYX2 928 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 OSBPL3Q9H4L5 887 aa19.49■□□□□ 0.71
LSM4-206ENST00000600289 ARMT1Q9H993 441 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms