RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 MAPKAPK5Q8IW41 473 aa21.86■■□□□ 1.09
LIG1-216ENST00000598938 SEC62Q99442 399 aaKnown RBP21.86■■□□□ 1.09
LIG1-216ENST00000598938 RBBP6Q7Z6E9 1792 aaKnown RBP21.86■■□□□ 1.09
LIG1-216ENST00000598938 USP5P45974 858 aa21.85■■□□□ 1.09
LIG1-216ENST00000598938 STRBPQ96SI9 672 aaKnown RBP21.85■■□□□ 1.09
LIG1-216ENST00000598938 HELLSQ9NRZ9 838 aa21.85■■□□□ 1.09
LIG1-216ENST00000598938 DDX60LQ5H9U9 1706 aaKnown RBP21.84■■□□□ 1.09
LIG1-216ENST00000598938 DDTLA6NHG4 134 aaPredicted RBP21.84■■□□□ 1.09
LIG1-216ENST00000598938 GPAA1O43292 621 aa21.84■■□□□ 1.09
LIG1-216ENST00000598938 FKTNO75072 461 aa21.84■■□□□ 1.09
LIG1-216ENST00000598938 FAM227BQ96M60 508 aa21.84■■□□□ 1.09
LIG1-216ENST00000598938 A0A0D9SFI3 127 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 HIP1O00291 1037 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 PRKAB2O43741 272 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 INHBEP58166 350 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 NMIQ13287 307 aaPredicted RBP21.83■■□□□ 1.09
LIG1-216ENST00000598938 BMP2KLQ5H9B9 411 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 SDR42E1Q8WUS8 393 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 HOOK2Q96ED9 719 aa21.83■■□□□ 1.09
LIG1-216ENST00000598938 LDLRAD1Q5T700 205 aa21.82■■□□□ 1.08
LIG1-216ENST00000598938 ZSCAN29Q8IWY8 852 aaPredicted RBP21.82■■□□□ 1.08
LIG1-216ENST00000598938 DHX36Q9H2U1 1008 aaKnown RBP21.82■■□□□ 1.08
LIG1-216ENST00000598938 DCP1AQ9NPI6 582 aaPredicted RBP21.82■■□□□ 1.08
LIG1-216ENST00000598938 ATP8A2Q9NTI2 1148 aa21.82■■□□□ 1.08
LIG1-216ENST00000598938 NAV1Q8NEY1 1877 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 GNAT2P19087 354 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 MAP3K11Q16584 847 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 MCMDC2Q4G0Z9 681 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 SPRYD7Q5W111 196 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 DIAPH3Q9NSV4 1193 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 SLC4A4Q9Y6R1 1079 aa21.81■■□□□ 1.08
LIG1-216ENST00000598938 UNCXA6NJT0 531 aa21.8■■□□□ 1.08
LIG1-216ENST00000598938 PPP1R12BO60237 982 aaPredicted RBP21.8■■□□□ 1.08
LIG1-216ENST00000598938 CCDC129Q6ZRS4 1044 aa21.8■■□□□ 1.08
LIG1-216ENST00000598938 SAP30BPQ9UHR5 308 aaKnown RBP21.8■■□□□ 1.08
LIG1-216ENST00000598938 FZD1Q9UP38 647 aa21.8■■□□□ 1.08
LIG1-216ENST00000598938 MANSC4A6NHS7 340 aaPredicted RBP21.79■■□□□ 1.08
LIG1-216ENST00000598938 GSG1L2A8MUP6 293 aa21.79■■□□□ 1.08
LIG1-216ENST00000598938 USP2O75604 605 aaPredicted RBP21.79■■□□□ 1.08
LIG1-216ENST00000598938 ZBTB48P10074 688 aaPredicted RBP21.79■■□□□ 1.08
LIG1-216ENST00000598938 MAP3K10Q02779 954 aa21.79■■□□□ 1.08
LIG1-216ENST00000598938 PRKG1Q13976 671 aa21.79■■□□□ 1.08
LIG1-216ENST00000598938 DCAF15Q66K64 600 aa21.79■■□□□ 1.08
LIG1-216ENST00000598938 PALD1Q9ULE6 856 aa21.79■■□□□ 1.08
LIG1-216ENST00000598938 MYH1P12882 1939 aa21.78■■□□□ 1.08
LIG1-216ENST00000598938 SIPA1L1O43166 1804 aa21.78■■□□□ 1.08
LIG1-216ENST00000598938 CHMLP26374 656 aa21.78■■□□□ 1.08
LIG1-216ENST00000598938 GIMAP6Q6P9H5 292 aa21.78■■□□□ 1.08
LIG1-216ENST00000598938 ZNF589Q86UQ0 364 aaPredicted RBP21.78■■□□□ 1.08
LIG1-216ENST00000598938 PI4KBQ9UBF8 816 aa21.78■■□□□ 1.08
LIG1-216ENST00000598938 ANGEL1Q9UNK9 670 aaKnown RBP21.78■■□□□ 1.08
LIG1-216ENST00000598938 HTTP42858 3142 aa21.77■■□□□ 1.08
LIG1-216ENST00000598938 PATL2C9JE40 543 aaKnown RBP21.77■■□□□ 1.08
LIG1-216ENST00000598938 FOXP2O15409 715 aa21.77■■□□□ 1.08
LIG1-216ENST00000598938 TBC1D12O60347 775 aa21.77■■□□□ 1.08
LIG1-216ENST00000598938 MKRN3Q13064 507 aaKnown RBP21.77■■□□□ 1.08
LIG1-216ENST00000598938 CWC27Q6UX04 472 aaKnown RBP21.77■■□□□ 1.08
LIG1-216ENST00000598938 MIGA2Q7L4E1 593 aa21.77■■□□□ 1.08
LIG1-216ENST00000598938 METTL16Q86W50 562 aaKnown RBP21.77■■□□□ 1.08
LIG1-216ENST00000598938 ZNF341Q9BYN7 854 aa21.77■■□□□ 1.08
LIG1-216ENST00000598938 EPB41L4AQ9HCS5 686 aaPredicted RBP21.77■■□□□ 1.08
LIG1-216ENST00000598938 MCM9Q9NXL9 1143 aa21.77■■□□□ 1.08
LIG1-216ENST00000598938 CCDC171Q6TFL3 1326 aa21.77■■□□□ 1.07
LIG1-216ENST00000598938 HLA-DOAP06340 250 aa21.76■■□□□ 1.07
LIG1-216ENST00000598938 IREB2P48200 963 aaKnown RBP21.76■■□□□ 1.07
LIG1-216ENST00000598938 TTC6Q86TZ1 520 aa21.76■■□□□ 1.07
LIG1-216ENST00000598938 DDRGK1Q96HY6 314 aa21.76■■□□□ 1.07
LIG1-216ENST00000598938 HERC5Q9UII4 1024 aaKnown RBP21.76■■□□□ 1.07
LIG1-216ENST00000598938 ZNF112Q9UJU3 913 aa21.76■■□□□ 1.07
LIG1-216ENST00000598938 POLR3DP05423 398 aaPredicted RBP21.75■■□□□ 1.07
LIG1-216ENST00000598938 SLURP2P0DP57 97 aa21.75■■□□□ 1.07
LIG1-216ENST00000598938 MFAP1P55081 439 aaKnown RBP21.75■■□□□ 1.07
LIG1-216ENST00000598938 IFNL1Q8IU54 200 aa21.75■■□□□ 1.07
LIG1-216ENST00000598938 FOXP4Q8IVH2 680 aaPredicted RBP21.75■■□□□ 1.07
LIG1-216ENST00000598938 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.75■■□□□ 1.07
LIG1-216ENST00000598938 EHD4Q9H223 541 aa21.75■■□□□ 1.07
LIG1-216ENST00000598938 RAD50Q92878 1312 aa21.75■■□□□ 1.07
LIG1-216ENST00000598938 OTOFQ9HC10 1997 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 PLCD1P51178 756 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 SLC4A8Q2Y0W8 1093 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 VPS53Q5VIR6 699 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 CTR9Q6PD62 1173 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 IFNL3Q8IZI9 196 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 IL25Q9H293 177 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 R3HDMLQ9H3Y0 253 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 GTF3C3Q9Y5Q9 886 aa21.74■■□□□ 1.07
LIG1-216ENST00000598938 BAZ2AQ9UIF9 1905 aaKnown RBP21.73■■□□□ 1.07
LIG1-216ENST00000598938 FAM196BA6NMK8 535 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 PHF20L1A8MW92 1017 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 USP17L12C9JPN9 530 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 USP17L21D6R901 530 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 APPP05067 770 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 CYP2D6P10635 497 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 EVX2Q03828 476 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 SBK1Q52WX2 424 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 C12orf60Q5U649 245 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 ANKRD13AQ8IZ07 590 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 RUFY2Q8WXA3 655 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 SLC10A4Q96EP9 437 aa21.73■■□□□ 1.07
LIG1-216ENST00000598938 WRNIP1Q96S55 665 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms