RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GSG1L2A8MUP6 293 aa17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 FOXP2O15409 715 aa17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 GPAA1O43292 621 aa17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 SHROOM1Q2M3G4 852 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 HOOK2Q96ED9 719 aa17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 WNK4Q96J92 1243 aa17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 DHX36Q9H2U1 1008 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 PI4KBQ9UBF8 816 aa17.11■□□□□ 0.33
SHKBP1-217ENST00000598558 A0A0D9SFI3 127 aa17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 UNCXA6NJT0 531 aa17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 SDSP20132 328 aa17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 MAP2K2P36507 400 aa17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 NOGQ13253 232 aa17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 NMIQ13287 307 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 EPB41L4AQ9HCS5 686 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 MCM9Q9NXL9 1143 aa17.1■□□□□ 0.33
SHKBP1-217ENST00000598558 CCDC84Q86UT8 332 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-217ENST00000598558 FOXP4Q8IVH2 680 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-217ENST00000598558 OPTNQ96CV9 577 aa17.09■□□□□ 0.33
SHKBP1-217ENST00000598558 ATP8A2Q9NTI2 1148 aa17.09■□□□□ 0.33
SHKBP1-217ENST00000598558 WBP1LQ9NX94 342 aa17.09■□□□□ 0.33
SHKBP1-217ENST00000598558 PPP4R2Q9NY27 417 aa17.09■□□□□ 0.33
SHKBP1-217ENST00000598558 USP17L12C9JPN9 530 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 USP17L21D6R901 530 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 GABPAQ06546 454 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 NOL9Q5SY16 702 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 VPS53Q5VIR6 699 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 CTR9Q6PD62 1173 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 DYNLL2Q96FJ2 89 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 CSADQ9Y600 493 aa17.08■□□□□ 0.32
SHKBP1-217ENST00000598558 SIPA1L1O43166 1804 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 SPDYE5A6NIY4 337 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 POLR3DP05423 398 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 LRRFIP1Q32MZ4 808 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 ERICH6BQ5W0A0 696 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 ZNF589Q86UQ0 364 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 OTUD5Q96G74 571 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 MS4A4AQ96JQ5 239 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 IL25Q9H293 177 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 HELLSQ9NRZ9 838 aa17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 HERC5Q9UII4 1024 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-217ENST00000598558 CDK5RAP2Q96SN8 1893 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 PATL2C9JE40 543 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 CTNND1O60716 968 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 HLA-DOAP06340 250 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 SHMT1P34896 483 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 CAP2P40123 477 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 C12orf60Q5U649 245 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 TTC6Q86TZ1 520 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 ERO1BQ86YB8 467 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 SCYL3Q8IZE3 742 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 SLC44A5Q8NCS7 719 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 EHD4Q9H223 541 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 OTOFQ9HC10 1997 aa17.06■□□□□ 0.32
SHKBP1-217ENST00000598558 IRF6O14896 467 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 HSPA1AP0DMV8 641 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 HSPA1BP0DMV9 641 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 ZBTB48P10074 688 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 PTPRAP18433 802 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 MCMDC2Q4G0Z9 681 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 TATDN1Q6P1N9 297 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 TICAM2Q86XR7 235 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 IFNL3Q8IZI9 196 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 CRACR2BQ8N4Y2 399 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 PTPN18Q99952 460 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 SERPINB13Q9UIV8 391 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 THSD7BQ9C0I4 1608 aa17.05■□□□□ 0.32
SHKBP1-217ENST00000598558 GDF11O95390 407 aa17.04■□□□□ 0.32
SHKBP1-217ENST00000598558 TM4SF4P48230 202 aa17.04■□□□□ 0.32
SHKBP1-217ENST00000598558 SBK1Q52WX2 424 aa17.04■□□□□ 0.32
SHKBP1-217ENST00000598558 ZHX2Q9Y6X8 837 aa17.04■□□□□ 0.32
SHKBP1-217ENST00000598558 FOCADQ5VW36 1801 aa17.04■□□□□ 0.32
SHKBP1-217ENST00000598558 DDX60LQ5H9U9 1706 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-217ENST00000598558 FOXN1O15353 648 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 APPP05067 770 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 GNAT2P19087 354 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 PPATQ06203 517 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 PPIL2Q13356 520 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 MOGSQ13724 837 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 GIMAP6Q6P9H5 292 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 CWC27Q6UX04 472 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 BRI3BPQ8WY22 251 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 TACC3Q9Y6A5 838 aa17.03■□□□□ 0.32
SHKBP1-217ENST00000598558 MYH7P12883 1935 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 TESPA1A2RU30 521 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 IGF2BP3O00425 579 aaKnown RBP eCLIP17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 CHMLP26374 656 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 GUCY1A2P33402 732 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 CDK8P49336 464 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 MAP2K1Q02750 393 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 STK11IPQ8N1F8 1099 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 RNF186Q9NXI6 227 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 TSKSQ9UJT2 592 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 KCNH4Q9UQ05 1017 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 AFG3L2Q9Y4W6 797 aa17.02■□□□□ 0.32
SHKBP1-217ENST00000598558 MANSC4A6NHS7 340 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 MINDY4BA8MYZ0 360 aa17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 HSPD1P10809 573 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 TRIM34Q9BYJ4 488 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms