RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PDE4BQ07343 736 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 RRP12Q5JTH9 1297 aaKnown RBP17.33■□□□□ 0.36
VRK3-212ENST00000596814 TCEANC2Q96MN5 208 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 TBC1D2Q9BYX2 928 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.33■□□□□ 0.36
VRK3-212ENST00000596814 ATRNL1Q5VV63 1379 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 FGRP09769 529 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 MCM5P33992 734 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 EPS15P42566 896 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 MCM2P49736 904 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 ZFPM1Q8IX07 1006 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 TRPM4Q8TD43 1214 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 DYNLL2Q96FJ2 89 aa17.32■□□□□ 0.36
VRK3-212ENST00000596814 DHX36Q9H2U1 1008 aaKnown RBP17.32■□□□□ 0.36
VRK3-212ENST00000596814 DCAF8L1A6NGE4 600 aa17.31■□□□□ 0.36
VRK3-212ENST00000596814 ORC4O43929 436 aa17.31■□□□□ 0.36
VRK3-212ENST00000596814 AK2P54819 239 aa17.31■□□□□ 0.36
VRK3-212ENST00000596814 C16orf86Q6ZW13 317 aa17.31■□□□□ 0.36
VRK3-212ENST00000596814 ZSCAN29Q8IWY8 852 aaPredicted RBP17.31■□□□□ 0.36
VRK3-212ENST00000596814 ESR2Q92731 530 aa17.31■□□□□ 0.36
VRK3-212ENST00000596814 L3MBTL3Q96JM7 780 aaPredicted RBP17.31■□□□□ 0.36
VRK3-212ENST00000596814 IPO9Q96P70 1041 aaKnown RBP17.31■□□□□ 0.36
VRK3-212ENST00000596814 CNTNAP1P78357 1384 aa17.31■□□□□ 0.36
VRK3-212ENST00000596814 WDR19Q8NEZ3 1342 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 GLTPD2A6NH11 291 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 PRC1O43663 620 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 KDM4AO75164 1064 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 PRDM1O75626 825 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 EXOSC10Q01780 885 aaKnown RBP17.3■□□□□ 0.36
VRK3-212ENST00000596814 FAM83AQ86UY5 434 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 ALDH8A1Q9H2A2 487 aaPredicted RBP17.3■□□□□ 0.36
VRK3-212ENST00000596814 ZNF287Q9HBT7 754 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 ADARB2Q9NS39 739 aaKnown RBP17.3■□□□□ 0.36
VRK3-212ENST00000596814 DDTLA6NHG4 134 aaPredicted RBP17.3■□□□□ 0.36
VRK3-212ENST00000596814 K7ELQ4 463 aaPredicted RBP17.3■□□□□ 0.36
VRK3-212ENST00000596814 TNNI2P48788 182 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 ANTXR2P58335 489 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 TNFAIP1Q13829 316 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 ANKRD1Q15327 319 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 Q6ZUG5 572 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 NOL8Q76FK4 1167 aaKnown RBP17.3■□□□□ 0.36
VRK3-212ENST00000596814 CYB5R4Q7L1T6 521 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 SH3BP5LQ7L8J4 393 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 CHST3Q7LGC8 479 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 NKX2-3Q8TAU0 364 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 FAM151AQ8WW52 585 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 LRRC2Q9BYS8 371 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 EHD4Q9H223 541 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 SERPINB13Q9UIV8 391 aa17.3■□□□□ 0.36
VRK3-212ENST00000596814 SCN4AP35499 1836 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 NT5C2P49902 561 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 FGD1P98174 961 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 GABPAQ06546 454 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 SLC44A5Q8NCS7 719 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 MKNK2Q9HBH9 465 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 PI4KBQ9UBF8 816 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 HACL1Q9UJ83 578 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 WDR90Q96KV7 1748 aa17.29■□□□□ 0.36
VRK3-212ENST00000596814 ASTN2O75129 1339 aaPredicted RBP17.28■□□□□ 0.36
VRK3-212ENST00000596814 RANBP6O60518 1105 aaKnown RBP17.28■□□□□ 0.36
VRK3-212ENST00000596814 CDK8P49336 464 aa17.28■□□□□ 0.36
VRK3-212ENST00000596814 TOB2Q14106 344 aaPredicted RBP17.28■□□□□ 0.36
VRK3-212ENST00000596814 ZSWIM5Q9P217 1185 aa17.28■□□□□ 0.36
VRK3-212ENST00000596814 SWAP70Q9UH65 585 aa17.28■□□□□ 0.36
VRK3-212ENST00000596814 APOBEC3FQ8IUX4 373 aaKnown RBP17.27■□□□□ 0.36
VRK3-212ENST00000596814 CRACR2BQ8N4Y2 399 aaPredicted RBP17.27■□□□□ 0.36
VRK3-212ENST00000596814 TMEM87BQ96K49 555 aa17.27■□□□□ 0.36
VRK3-212ENST00000596814 CSRNP1Q96S65 589 aa17.27■□□□□ 0.36
VRK3-212ENST00000596814 DAXXQ9UER7 740 aaPredicted RBP17.27■□□□□ 0.36
VRK3-212ENST00000596814 FBXL16Q8N461 479 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 TRIM34Q9BYJ4 488 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 AGXT2Q9BYV1 514 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 TMEM39BQ9GZU3 492 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 GGA3Q9NZ52 723 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 TAOK2Q9UL54 1235 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 LIMCH1Q9UPQ0 1083 aa17.27■□□□□ 0.35
VRK3-212ENST00000596814 TSPY2A6NKD2 308 aa17.26■□□□□ 0.35
VRK3-212ENST00000596814 RASA1P20936 1047 aa17.26■□□□□ 0.35
VRK3-212ENST00000596814 HIRAP54198 1017 aaPredicted RBP17.26■□□□□ 0.35
VRK3-212ENST00000596814 SART3Q15020 963 aaKnown RBP17.26■□□□□ 0.35
VRK3-212ENST00000596814 ANGEL2Q5VTE6 544 aaKnown RBP17.26■□□□□ 0.35
VRK3-212ENST00000596814 ZNF444Q8N0Y2 327 aaPredicted RBP17.26■□□□□ 0.35
VRK3-212ENST00000596814 BRF1Q92994 677 aa17.26■□□□□ 0.35
VRK3-212ENST00000596814 UBAC1Q9BSL1 405 aa17.26■□□□□ 0.35
VRK3-212ENST00000596814 MTA3Q9BTC8 594 aa17.26■□□□□ 0.35
VRK3-212ENST00000596814 SH2B2O14492 632 aaPredicted RBP17.25■□□□□ 0.35
VRK3-212ENST00000596814 RASA3Q14644 834 aa17.25■□□□□ 0.35
VRK3-212ENST00000596814 TMEM67Q5HYA8 995 aa17.25■□□□□ 0.35
VRK3-212ENST00000596814 FAM47AQ5JRC9 791 aa17.25■□□□□ 0.35
VRK3-212ENST00000596814 IQCA1Q86XH1 822 aa17.25■□□□□ 0.35
VRK3-212ENST00000596814 FOXP4Q8IVH2 680 aaPredicted RBP17.25■□□□□ 0.35
VRK3-212ENST00000596814 LARP6Q9BRS8 491 aaKnown RBP17.25■□□□□ 0.35
VRK3-212ENST00000596814 ANGEL1Q9UNK9 670 aaKnown RBP17.25■□□□□ 0.35
VRK3-212ENST00000596814 ERICH2A1L162 156 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 IQCA1LA6NCM1 817 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 IFIT3O14879 490 aaKnown RBP17.24■□□□□ 0.35
VRK3-212ENST00000596814 EPHX2P34913 555 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 SLC4A3P48751 1232 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 TFAP4Q01664 338 aa17.24■□□□□ 0.35
VRK3-212ENST00000596814 TMX3Q96JJ7 454 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms