RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SPDYE5A6NIY4 337 aa18.09■□□□□ 0.49
UPF1-202ENST00000594243 PPATQ06203 517 aa18.09■□□□□ 0.49
UPF1-202ENST00000594243 TICAM2Q86XR7 235 aa18.09■□□□□ 0.49
UPF1-202ENST00000594243 CRACR2BQ8N4Y2 399 aaPredicted RBP18.09■□□□□ 0.49
UPF1-202ENST00000594243 ATP8A2Q9NTI2 1148 aa18.09■□□□□ 0.49
UPF1-202ENST00000594243 FOXN1O15353 648 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 CHGBP05060 677 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 POLR3DP05423 398 aaPredicted RBP18.08■□□□□ 0.48
UPF1-202ENST00000594243 NEFLP07196 543 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 CTCFP49711 727 aaPredicted RBP18.08■□□□□ 0.48
UPF1-202ENST00000594243 METTL16Q86W50 562 aaKnown RBP18.08■□□□□ 0.48
UPF1-202ENST00000594243 SCYL3Q8IZE3 742 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 SDR42E1Q8WUS8 393 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 OTUD5Q96G74 571 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 DDRGK1Q96HY6 314 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 PICK1Q9NRD5 415 aa18.08■□□□□ 0.48
UPF1-202ENST00000594243 TRIM6-TRIM34B2RNG4 842 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 GJA5P36382 358 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 GTF2A2P52657 109 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 OSBP2Q969R2 916 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 DCP1AQ9NPI6 582 aaPredicted RBP18.07■□□□□ 0.48
UPF1-202ENST00000594243 MCM9Q9NXL9 1143 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 SAGE1Q9NXZ1 904 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 SLC4A4Q9Y6R1 1079 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 FOCADQ5VW36 1801 aa18.07■□□□□ 0.48
UPF1-202ENST00000594243 FAM196BA6NMK8 535 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 SLURP2P0DP57 97 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 GNAT2P19087 354 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 PPIL2Q13356 520 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 OTUD7BQ6GQQ9 843 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 AMOTL1Q8IY63 956 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 CNKSR2Q8WXI2 1034 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 STRBPQ96SI9 672 aaKnown RBP18.06■□□□□ 0.48
UPF1-202ENST00000594243 EHD4Q9H223 541 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 RNF186Q9NXI6 227 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 SERPINB13Q9UIV8 391 aa18.06■□□□□ 0.48
UPF1-202ENST00000594243 OTOFQ9HC10 1997 aa18.05■□□□□ 0.48
UPF1-202ENST00000594243 TESPA1A2RU30 521 aaPredicted RBP18.05■□□□□ 0.48
UPF1-202ENST00000594243 PRKAB2O43741 272 aa18.05■□□□□ 0.48
UPF1-202ENST00000594243 ALDH1A1P00352 501 aa18.05■□□□□ 0.48
UPF1-202ENST00000594243 TNS4Q8IZW8 715 aa18.05■□□□□ 0.48
UPF1-202ENST00000594243 RILPL2Q969X0 211 aa18.05■□□□□ 0.48
UPF1-202ENST00000594243 CDK5RAP2Q96SN8 1893 aa18.05■□□□□ 0.48
UPF1-202ENST00000594243 MYH7P12883 1935 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 IRF6O14896 467 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 TRPA1O75762 1119 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 PTPRAP18433 802 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 CAP2P40123 477 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 SNAPC2Q13487 334 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 SLC4A8Q2Y0W8 1093 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 ZMYM1Q5SVZ6 1142 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 IFNL1Q8IU54 200 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 MS4A4AQ96JQ5 239 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 GINM1Q9NU53 330 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 TAOK2Q9UL54 1235 aa18.04■□□□□ 0.48
UPF1-202ENST00000594243 GPAA1O43292 621 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 CETPP11597 493 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 PDE4AP27815 886 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 PLCD1P51178 756 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 TATDN1Q6P1N9 297 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 GIMAP6Q6P9H5 292 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 CENPQQ7L2Z9 268 aaPredicted RBP18.03■□□□□ 0.48
UPF1-202ENST00000594243 TBC1D2Q9BYX2 928 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 ZHX2Q9Y6X8 837 aa18.03■□□□□ 0.48
UPF1-202ENST00000594243 CCL15-CCL14A0A0B4J2E2 113 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 PATL2C9JE40 543 aaKnown RBP18.02■□□□□ 0.48
UPF1-202ENST00000594243 M0R2C6 588 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 CXCL11O14625 94 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 HSPA8P11142 646 aaKnown RBP18.02■□□□□ 0.48
UPF1-202ENST00000594243 LBX1P52954 281 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 CCL15Q16663 113 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 SEC62Q99442 399 aaKnown RBP18.02■□□□□ 0.48
UPF1-202ENST00000594243 DNAJC18Q9H819 358 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 PRDM10Q9NQV6 1147 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 HELLSQ9NRZ9 838 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 KCNH4Q9UQ05 1017 aa18.02■□□□□ 0.48
UPF1-202ENST00000594243 GSG1L2A8MUP6 293 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 USP17L12C9JPN9 530 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 USP17L21D6R901 530 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 CAPN15O75808 1086 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 APPP05067 770 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 ASNSP08243 561 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 C12orf60Q5U649 245 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 ARPP21Q9UBL0 812 aaPredicted RBP18.01■□□□□ 0.47
UPF1-202ENST00000594243 SWAP70Q9UH65 585 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 AFG3L2Q9Y4W6 797 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 MYH1P12882 1939 aa18.01■□□□□ 0.47
UPF1-202ENST00000594243 USP17L5A8MUK1 530 aa18■□□□□ 0.47
UPF1-202ENST00000594243 GABPAQ06546 454 aa18■□□□□ 0.47
UPF1-202ENST00000594243 RRP1BQ14684 758 aaKnown RBP18■□□□□ 0.47
UPF1-202ENST00000594243 CERKLQ49MI3 558 aaPredicted RBP18■□□□□ 0.47
UPF1-202ENST00000594243 CTR9Q6PD62 1173 aa18■□□□□ 0.47
UPF1-202ENST00000594243 BRI3BPQ8WY22 251 aa18■□□□□ 0.47
UPF1-202ENST00000594243 CCDC136Q96JN2 1154 aa18■□□□□ 0.47
UPF1-202ENST00000594243 PTPN18Q99952 460 aa18■□□□□ 0.47
UPF1-202ENST00000594243 CFHR5Q9BXR6 569 aa18■□□□□ 0.47
UPF1-202ENST00000594243 NACAP1Q9BZK3 213 aa18■□□□□ 0.47
UPF1-202ENST00000594243 AS3MTQ9HBK9 375 aa18■□□□□ 0.47
UPF1-202ENST00000594243 TSKSQ9UJT2 592 aa18■□□□□ 0.47
UPF1-202ENST00000594243 HIP1O00291 1037 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms