RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 FBXO2Q9UK22 296 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-219ENST00000592604 LRP6O75581 1613 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 TNS3Q68CZ2 1445 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 ZNF532Q9HCE3 1301 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 TBC1D8O95759 1140 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 IRX3P78415 501 aaPredicted RBP17■□□□□ 0.31
SMARCA4-219ENST00000592604 TMEM67Q5HYA8 995 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 CC2D1AQ6P1N0 951 aaPredicted RBP17■□□□□ 0.31
SMARCA4-219ENST00000592604 ZNF579Q8NAF0 562 aaKnown RBP17■□□□□ 0.31
SMARCA4-219ENST00000592604 CDHR2Q9BYE9 1310 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 TCRBV5S4A2TA0A5A2 114 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 CDK11BP21127 795 aaKnown RBP17■□□□□ 0.31
SMARCA4-219ENST00000592604 TOGARAM2Q6ZUX3 1019 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 STRBPQ96SI9 672 aaKnown RBP17■□□□□ 0.31
SMARCA4-219ENST00000592604 SLC26A6Q9BXS9 759 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 ERICH4A6NGS2 130 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 MMP1P03956 469 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 PDE6AP16499 860 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 PPP2R3AQ06190 1150 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 NR1I3Q14994 352 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 TEX35Q5T0J7 233 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 LDHAL6AQ6ZMR3 332 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 NUTM2AQ8IVF1 878 aaPredicted RBP17■□□□□ 0.31
SMARCA4-219ENST00000592604 PDILTQ8N807 584 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 VGLL2Q8N8G2 317 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 RABGGTAQ92696 567 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 SLC12A7Q9Y666 1083 aa17■□□□□ 0.31
SMARCA4-219ENST00000592604 BTBD18B2RXH4 712 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 UBE2Q2LH0YL09 131 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 SEC31AO94979 1220 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 ADKP55263 362 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 RILPL1Q5EBL4 403 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 FAM177A1Q8N128 213 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 SPATA20Q8TB22 786 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 FOXP1Q9H334 677 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 SAFBQ15424 915 aaKnown RBP eCLIP16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 SPECC1Q5M775 1068 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 SMARCE1Q969G3 411 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 MED15Q96RN5 788 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 MYL10Q9BUA6 226 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 ZSWIM5Q9P217 1185 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 SERTAD1Q9UHV2 236 aa16.99■□□□□ 0.31
SMARCA4-219ENST00000592604 CHD4Q14839 1912 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 IDH1O75874 414 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 SASH3O75995 380 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 PRR29P0C7W0 189 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 KANK3Q6NY19 840 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 TTLL11Q8NHH1 800 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 RAI14Q9P0K7 980 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 POLR2DO15514 142 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 ATF3P18847 181 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 ERCC5P28715 1186 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 ARID4AP29374 1257 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 GRIN1Q05586 938 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 CT47A1Q5JQC4 288 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 DIS3L2Q8IYB7 885 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 TBC1D2BQ9UPU7 963 aa16.98■□□□□ 0.31
SMARCA4-219ENST00000592604 A0A1B0GTH6 734 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 PATL2C9JE40 543 aaKnown RBP16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 IFIT3O14879 490 aaKnown RBP16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 ITGA6P23229 1130 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 HSP90AA4PQ58FG1 418 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 EPC1Q9H2F5 836 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 PANX2Q96RD6 677 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 WWC3Q9ULE0 1092 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 SRPRBQ9Y5M8 271 aaKnown RBP16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 UQCRFS1P1P0C7P4 283 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 GUCY1A2P33402 732 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 JAKMIP3Q5VZ66 844 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 KIF6Q6ZMV9 814 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 IFNL3Q8IZI9 196 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 AIDAQ96BJ3 306 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 PARD6BQ9BYG5 372 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 GREM2Q9H772 168 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 CNNM2Q9H8M5 875 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 ARFGAP3Q9NP61 516 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 INCENPQ9NQS7 918 aa16.97■□□□□ 0.31
SMARCA4-219ENST00000592604 WDR17Q8IZU2 1322 aa16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 ACTN4O43707 911 aaKnown RBP16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 PDE8BO95263 885 aa16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 PLCD1P51178 756 aa16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 SAMSN1Q9NSI8 373 aaKnown RBP16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 TAOK2Q9UL54 1235 aa16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 SPATA31A3Q5VYP0 1347 aa16.96■□□□□ 0.31
SMARCA4-219ENST00000592604 ANKRD18BA2A2Z9 1011 aa16.96■□□□□ 0.3
SMARCA4-219ENST00000592604 ZBTB22O15209 634 aa16.96■□□□□ 0.3
SMARCA4-219ENST00000592604 KRT23Q9C075 422 aa16.96■□□□□ 0.3
SMARCA4-219ENST00000592604 EPB41L4AQ9HCS5 686 aaPredicted RBP16.96■□□□□ 0.3
SMARCA4-219ENST00000592604 CNNM1Q9NRU3 951 aa16.96■□□□□ 0.3
SMARCA4-219ENST00000592604 TACC3Q9Y6A5 838 aa16.96■□□□□ 0.3
SMARCA4-219ENST00000592604 GIGYF2Q6Y7W6 1299 aaKnown RBP16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 TRMT44Q8IYL2 757 aaKnown RBP16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 TRIM22Q8IYM9 498 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 GOLGA1Q92805 767 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 DHX58Q96C10 678 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 MYH3P11055 1940 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 TIAM2Q8IVF5 1701 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 AKR1B15C9JRZ8 316 aaPredicted RBP16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 CCDC175P0C221 793 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 PHKA1P46020 1223 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms