RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.34□□□□□ -0.11
LIG3-213ENST00000590630 PALD1Q9ULE6 856 aa14.34□□□□□ -0.11
LIG3-213ENST00000590630 MYH8P13535 1937 aa14.33□□□□□ -0.11
LIG3-213ENST00000590630 FOXN1O15353 648 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 CTNND1O60716 968 aaKnown RBP14.33□□□□□ -0.12
LIG3-213ENST00000590630 CHGBP05060 677 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 GJA5P36382 358 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 TM4SF4P48230 202 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 METTL16Q86W50 562 aaKnown RBP14.33□□□□□ -0.12
LIG3-213ENST00000590630 TICAM2Q86XR7 235 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 FOXP4Q8IVH2 680 aaPredicted RBP14.33□□□□□ -0.12
LIG3-213ENST00000590630 PLEKHM2Q8IWE5 1019 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 OTUD5Q96G74 571 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 PUS7LQ9H0K6 701 aaKnown RBP14.33□□□□□ -0.12
LIG3-213ENST00000590630 ARMT1Q9H993 441 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 ATP8A2Q9NTI2 1148 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 SAGE1Q9NXZ1 904 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 SAP30BPQ9UHR5 308 aaKnown RBP14.33□□□□□ -0.12
LIG3-213ENST00000590630 PHIPQ8WWQ0 1821 aa14.33□□□□□ -0.12
LIG3-213ENST00000590630 CTCFP49711 727 aaPredicted RBP14.32□□□□□ -0.12
LIG3-213ENST00000590630 PPATQ06203 517 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 PPIL2Q13356 520 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 TTC6Q86TZ1 520 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 SCYL3Q8IZE3 742 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 CRACR2BQ8N4Y2 399 aaPredicted RBP14.32□□□□□ -0.12
LIG3-213ENST00000590630 CNKSR2Q8WXI2 1034 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 TRIM34Q9BYJ4 488 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 EHD4Q9H223 541 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 DCP1AQ9NPI6 582 aaPredicted RBP14.32□□□□□ -0.12
LIG3-213ENST00000590630 PICK1Q9NRD5 415 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 PTPRFP10586 1907 aa14.32□□□□□ -0.12
LIG3-213ENST00000590630 FAM196BA6NMK8 535 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 NEFLP07196 543 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 GTF2A2P52657 109 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 SDR42E1Q8WUS8 393 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 OSBP2Q969R2 916 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 DDRGK1Q96HY6 314 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 MCM9Q9NXL9 1143 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 SERPINB13Q9UIV8 391 aa14.31□□□□□ -0.12
LIG3-213ENST00000590630 TESPA1A2RU30 521 aaPredicted RBP14.3□□□□□ -0.12
LIG3-213ENST00000590630 IRF6O14896 467 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 ALDH1A1P00352 501 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 POLR3DP05423 398 aaPredicted RBP14.3□□□□□ -0.12
LIG3-213ENST00000590630 SLURP2P0DP57 97 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 GNAT2P19087 354 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 MS4A4AQ96JQ5 239 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 STRBPQ96SI9 672 aaKnown RBP14.3□□□□□ -0.12
LIG3-213ENST00000590630 DNAJC18Q9H819 358 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 RNF186Q9NXI6 227 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 TAOK2Q9UL54 1235 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 SLC4A4Q9Y6R1 1079 aa14.3□□□□□ -0.12
LIG3-213ENST00000590630 GPAA1O43292 621 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 PRKAB2O43741 272 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 TRPA1O75762 1119 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 HSPA8P11142 646 aaKnown RBP14.29□□□□□ -0.12
LIG3-213ENST00000590630 PTPRAP18433 802 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 CAP2P40123 477 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 SNAPC2Q13487 334 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 SLC4A8Q2Y0W8 1093 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 ZMYM1Q5SVZ6 1142 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 OTUD7BQ6GQQ9 843 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 GIMAP6Q6P9H5 292 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 IFNL1Q8IU54 200 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 AMOTL1Q8IY63 956 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 KCNH4Q9UQ05 1017 aa14.29□□□□□ -0.12
LIG3-213ENST00000590630 TRIM6-TRIM34B2RNG4 842 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 ASNSP08243 561 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 CETPP11597 493 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 PDE4AP27815 886 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 PLCD1P51178 756 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 TATDN1Q6P1N9 297 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 CENPQQ7L2Z9 268 aaPredicted RBP14.28□□□□□ -0.12
LIG3-213ENST00000590630 TBC1D2Q9BYX2 928 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 PRDM10Q9NQV6 1147 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 GINM1Q9NU53 330 aa14.28□□□□□ -0.12
LIG3-213ENST00000590630 CASP8AP2Q9UKL3 1982 aa14.27□□□□□ -0.12
LIG3-213ENST00000590630 CCL15-CCL14A0A0B4J2E2 113 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 M0R2C6 588 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 IGF2BP3O00425 579 aaKnown RBP eCLIP14.27□□□□□ -0.13
LIG3-213ENST00000590630 CXCL11O14625 94 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 LBX1P52954 281 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 CCL15Q16663 113 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 BRI3BPQ8WY22 251 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 RILPL2Q969X0 211 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 CFHR5Q9BXR6 569 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 ARPP21Q9UBL0 812 aaPredicted RBP14.27□□□□□ -0.13
LIG3-213ENST00000590630 ZHX2Q9Y6X8 837 aa14.27□□□□□ -0.13
LIG3-213ENST00000590630 GSG1L2A8MUP6 293 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 GABPAQ06546 454 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 RRP1BQ14684 758 aaKnown RBP14.26□□□□□ -0.13
LIG3-213ENST00000590630 C12orf60Q5U649 245 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 SEC62Q99442 399 aaKnown RBP14.26□□□□□ -0.13
LIG3-213ENST00000590630 PTPN18Q99952 460 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 ZCCHC17Q9NP64 241 aaKnown RBP14.26□□□□□ -0.13
LIG3-213ENST00000590630 HELLSQ9NRZ9 838 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 SWAP70Q9UH65 585 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 TSKSQ9UJT2 592 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 AFG3L2Q9Y4W6 797 aa14.26□□□□□ -0.13
LIG3-213ENST00000590630 LOC285556D6RIA3 1793 aa14.25□□□□□ -0.13
LIG3-213ENST00000590630 USP17L5A8MUK1 530 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms