RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 DIEXFQ68CQ4 756 aaKnown RBP13.78□□□□□ -0.2
ZNF540-209ENST00000590588 SH3BP5LQ7L8J4 393 aa13.78□□□□□ -0.2
ZNF540-209ENST00000590588 CCDC84Q86UT8 332 aaPredicted RBP13.78□□□□□ -0.2
ZNF540-209ENST00000590588 ZNF280CQ8ND82 737 aa13.78□□□□□ -0.2
ZNF540-209ENST00000590588 FAM122AQ96E09 287 aa13.78□□□□□ -0.2
ZNF540-209ENST00000590588 DNAH12Q6ZR08 3092 aa13.77□□□□□ -0.2
ZNF540-209ENST00000590588 DDTLA6NHG4 134 aaPredicted RBP13.77□□□□□ -0.21
ZNF540-209ENST00000590588 TBC1D12O60347 775 aa13.77□□□□□ -0.21
ZNF540-209ENST00000590588 CCND3P30281 292 aaPredicted RBP13.77□□□□□ -0.21
ZNF540-209ENST00000590588 PDE3AQ14432 1141 aa13.77□□□□□ -0.21
ZNF540-209ENST00000590588 CCDC27Q2M243 656 aa13.77□□□□□ -0.21
ZNF540-209ENST00000590588 SRCIN1Q9C0H9 1055 aa13.77□□□□□ -0.21
ZNF540-209ENST00000590588 TTYH1Q9H313 450 aaPredicted RBP13.77□□□□□ -0.21
ZNF540-209ENST00000590588 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.77□□□□□ -0.21
ZNF540-209ENST00000590588 SLURP2P0DP57 97 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 SLC5A1P13866 664 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 HMGCS2P54868 508 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 RABL6Q3YEC7 729 aaPredicted RBP13.76□□□□□ -0.21
ZNF540-209ENST00000590588 WWC1Q8IX03 1113 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 GPRC5AQ8NFJ5 357 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 LPIN2Q92539 896 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 OSBPL5Q9H0X9 879 aaPredicted RBP13.76□□□□□ -0.21
ZNF540-209ENST00000590588 BICC1Q9H694 974 aaKnown RBP13.76□□□□□ -0.21
ZNF540-209ENST00000590588 RAPGEFL1Q9UHV5 662 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 PTPRFP10586 1907 aa13.76□□□□□ -0.21
ZNF540-209ENST00000590588 TTC28Q96AY4 2481 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 IL16Q14005 1332 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 SALL1Q9NSC2 1324 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 CACNA1FO60840 1977 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 NBPF7P0C2Y1 421 aaPredicted RBP13.75□□□□□ -0.21
ZNF540-209ENST00000590588 MAPK4P31152 587 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 RGS2P41220 211 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 ATN1P54259 1190 aaPredicted RBP13.75□□□□□ -0.21
ZNF540-209ENST00000590588 SH3D19Q5HYK7 790 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 SLC4A10Q6U841 1118 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 CCAR1Q8IX12 1150 aaKnown RBP13.75□□□□□ -0.21
ZNF540-209ENST00000590588 USP6NLQ92738 828 aa13.75□□□□□ -0.21
ZNF540-209ENST00000590588 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.75□□□□□ -0.21
ZNF540-209ENST00000590588 GNL3LQ9NVN8 582 aaKnown RBP13.75□□□□□ -0.21
ZNF540-209ENST00000590588 TMEM265A0A087WTH1 108 aa13.74□□□□□ -0.21
ZNF540-209ENST00000590588 USP17L5A8MUK1 530 aa13.74□□□□□ -0.21
ZNF540-209ENST00000590588 IRX3P78415 501 aaPredicted RBP13.74□□□□□ -0.21
ZNF540-209ENST00000590588 C9orf50Q5SZB4 431 aa13.74□□□□□ -0.21
ZNF540-209ENST00000590588 SLF2Q8IX21 1173 aa13.74□□□□□ -0.21
ZNF540-209ENST00000590588 P2RX7Q99572 595 aaKnown RBP13.74□□□□□ -0.21
ZNF540-209ENST00000590588 AS3MTQ9HBK9 375 aa13.74□□□□□ -0.21
ZNF540-209ENST00000590588 PHIPQ8WWQ0 1821 aa13.74□□□□□ -0.21
ZNF540-209ENST00000590588 UTYO14607 1347 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 GAKO14976 1311 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 MSCO60682 206 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 HOXA7P31268 230 aaPredicted RBP13.73□□□□□ -0.21
ZNF540-209ENST00000590588 RTP1P59025 263 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 PICALMQ13492 652 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 CCL14Q16627 93 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 ZGPATQ8N5A5 531 aaKnown RBP13.73□□□□□ -0.21
ZNF540-209ENST00000590588 KLHDC4Q8TBB5 520 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 LPAR1Q92633 364 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 DDX4Q9NQI0 724 aaKnown RBP13.73□□□□□ -0.21
ZNF540-209ENST00000590588 DENND2AQ9ULE3 1009 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 PLXNB2O15031 1838 aa13.73□□□□□ -0.21
ZNF540-209ENST00000590588 DOCK1Q14185 1865 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 DOCK2Q92608 1830 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 DNM1LO00429 736 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 CAP2P40123 477 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 DDX10Q13206 875 aaKnown RBP13.72□□□□□ -0.21
ZNF540-209ENST00000590588 MORN1Q5T089 497 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 MFSD14CQ5VZR4 134 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 GPR142Q7Z601 462 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 PLEKHH3Q7Z736 793 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 FAM163AQ96GL9 167 aaPredicted RBP13.72□□□□□ -0.21
ZNF540-209ENST00000590588 APBA2Q99767 749 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 TXNRD2Q9NNW7 524 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 TMOD4Q9NZQ9 345 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 DDX20Q9UHI6 824 aaKnown RBP13.72□□□□□ -0.21
ZNF540-209ENST00000590588 ATP11BQ9Y2G3 1177 aa13.72□□□□□ -0.21
ZNF540-209ENST00000590588 FANCIQ9NVI1 1328 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 SEMA3EO15041 775 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 BACE1P56817 501 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 HERVK_113P62684 666 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 EXOSC9Q06265 439 aaKnown RBP13.71□□□□□ -0.21
ZNF540-209ENST00000590588 Q3C1V9 767 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 ANKRD44Q8N8A2 993 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 ATXN2LQ8WWM7 1075 aaKnown RBP13.71□□□□□ -0.21
ZNF540-209ENST00000590588 BADQ92934 168 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 EDC3Q96F86 508 aaKnown RBP13.71□□□□□ -0.21
ZNF540-209ENST00000590588 RBPJLQ9UBG7 517 aa13.71□□□□□ -0.21
ZNF540-209ENST00000590588 RFX7Q2KHR2 1363 aa13.71□□□□□ -0.22
ZNF540-209ENST00000590588 EYA2O00167 538 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 PEX10O60683 326 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 CNGA1P29973 690 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 BTDP43251 543 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 ERVK-9P63128 1117 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 ERVK-24P63145 666 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 MAP3K12Q12852 859 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 SLC39A5Q6ZMH5 540 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 DZIP1Q86YF9 867 aaKnown RBP13.7□□□□□ -0.22
ZNF540-209ENST00000590588 GTF3C2Q8WUA4 911 aaPredicted RBP13.7□□□□□ -0.22
ZNF540-209ENST00000590588 WDR18Q9BV38 432 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 PORCNQ9H237 461 aa13.7□□□□□ -0.22
ZNF540-209ENST00000590588 CWC22Q9HCG8 908 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms